INPHARED2

INPHARED2 is the new home of the INPHARED resource, providing a curated, regularly updated set of complete bacteriophage genomes with associated metadata and genome quality information, including CheckV assessments and taxonomy generated using taxMyPhage.

Building on the original database, INPHARED2 provides an expanded and improved reference resource for phage genomics; the updated resource and analysis are described in our INPHARED2 preprint. It provides an easy-to-use online search function alongside bulk data downloads.

Explore INPHARED2 data visually

Create interactive summaries of genome metadata and download the resulting figures.

Open graphs

Search INPHARED

Search by accession, description, host or taxonomy. The filters below reflect the initial INPHARED2 display specification.

Host (NCBI)

Family (NCBI)

Genus (TaxMyPhage)

CheckV quality

PhageLeads lifestyle

Rows

Clear

Choose fields for download

36350 matching reference genomes out of 36350. Search and filters are active; download will follow after the fields are finalised.

INPHARED2 search results

The results table contains the selected original taxonomy, CheckV, TaxMyPhage and PhageLeads fields. It can be scrolled horizontally for the full record.

Accession ▼	Description	Genome Length (bp)	molGC (%)	Host	Baltimore Group	Lowest Taxa	Genus	Sub-family	Family	Order	Class	Phylum	Kingdom	Realm	Isolation Host	CheckV quality	CheckV MIUVIG quality	CheckV completeness	CheckV completeness method	TaxMyPhage genus	TaxMyPhage species	TaxMyPhage message	PhageLeads lifestyle	PhageLeads problematic genes
PP978865	Microbacterium phage FarmerDoug	41758	63.593	Microbacterium	Unclassified	Unclassified	Unclassified	Unclassified	Unclassified	Unclassified	Unclassified	Unclassified	Unclassified	Unclassified	Microbacterium foliorum NRRL B-24224 SEA	High-quality	High-quality	100.000	AAI-based (high-confidence)	Ilzatvirus	Ilzatvirus new_name	Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level	lytic
PP978864	Arthrobacter phage Brunswick	58216	49.885	Arthrobacter	Unclassified	Unclassified	Unclassified	Unclassified	Unclassified	Unclassified	Unclassified	Unclassified	Unclassified	Unclassified	Arthrobacter sp. ATCC 21022	High-quality	High-quality	100.000	AAI-based (high-confidence)	Gordonvirus	Gordonvirus new_name	Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level	temperate	antirepressor orf_8
PP978863	Microbacterium phage Rog141	41546	63.424	Microbacterium	Unclassified	Unclassified	Unclassified	Unclassified	Unclassified	Unclassified	Unclassified	Unclassified	Unclassified	Unclassified	Microbacterium foliorum NRRL B-24224	High-quality	High-quality	100.000	AAI-based (high-confidence)	Ilzatvirus	Ilzatvirus ilzat	Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level	lytic
PP978862	Gordonia phage Fazel	60088	52.022	Gordonia	Unclassified	Unclassified	Unclassified	Unclassified	Unclassified	Unclassified	Unclassified	Unclassified	Unclassified	Unclassified	Gordonia rubripertincta NRRL B-16540	High-quality	High-quality	96.950	AAI-based (high-confidence)	Kenoshavirus	Kenoshavirus new_name	Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level	lytic
PP978861	Arthrobacter phage JasmineDragon	43672	66.754	Arthrobacter	Unclassified	Unclassified	Unclassified	Unclassified	Unclassified	Unclassified	Unclassified	Unclassified	Unclassified	Unclassified	Arthrobacter sulfureus ATCC 19098	High-quality	High-quality	98.890	AAI-based (high-confidence)	Hilgardvirus	Hilgardvirus new_name	Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level	lytic
PP978860	Streptomyces phage Zainub	51761	67.398	Streptomyces	Unclassified	Unclassified	Unclassified	Unclassified	Unclassified	Unclassified	Unclassified	Unclassified	Unclassified	Unclassified	Streptomyces baarnensis NRRL B-2842	High-quality	High-quality	100.000	AAI-based (high-confidence)	Salutenavirus	Salutenavirus new_name	The number of expected genera is different from the predicted number of genus clusters. It will require more manual curation	temperate	immunity orf_30;integrase orf_52
PP978859	Arthrobacter phage AWGoat	65496	67.138	Arthrobacter	Unclassified	Unclassified	Unclassified	Unclassified	Unclassified	Unclassified	Unclassified	Unclassified	Unclassified	Unclassified	Arthrobacter globiformis NRRL B-2880	Complete	High-quality	100.000	DTR (high-confidence)	Silentrexvirus	Silentrexvirus new_name	Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level	lytic
PP978858	Microbacterium phage Pharpay	56718	63.713	Microbacterium	Unclassified	Unclassified	Unclassified	Unclassified	Unclassified	Unclassified	Unclassified	Unclassified	Unclassified	Unclassified	Microbacterium foliorum NRRL B-24224	High-quality	High-quality	100.000	AAI-based (high-confidence)	Krampusvirus	Krampusvirus krampus	Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level	lytic
PP978857	Streptomyces phage Puginator	51731	67.557	Streptomyces	Unclassified	Unclassified	Unclassified	Unclassified	Unclassified	Unclassified	Unclassified	Unclassified	Unclassified	Unclassified	Streptomyces baarnensis NRRL B-2842	High-quality	High-quality	100.000	AAI-based (high-confidence)	Salutenavirus	Salutenavirus new_name	The number of expected genera is different from the predicted number of genus clusters. It will require more manual curation	temperate	immunity orf_29;integrase orf_52
PP978856	Gordonia phage Charianelly	73732	59.082	Gordonia	Unclassified	Unclassified	Unclassified	Unclassified	Unclassified	Unclassified	Unclassified	Unclassified	Unclassified	Unclassified	Gordonia terrae 3612	Complete	High-quality	100.000	DTR (high-confidence)	Woesvirus	Woesvirus new_name	Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level	temperate	cro orf_3