Becky Mayer Centre for Phage Research
BMCPR PhageBank
INPHARED2

INPHARED2

INPHARED2 is the new home of the INPHARED resource, providing a curated, regularly updated set of complete bacteriophage genomes with associated metadata and genome quality information, including CheckV assessments and taxonomy generated using taxMyPhage.

Building on the original database, INPHARED2 provides an expanded and improved reference resource for phage genomics; the updated resource and analysis are described in our INPHARED2 preprint. It provides an easy-to-use online search function alongside bulk data downloads.

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Search by accession, description, host or taxonomy. The filters below reflect the initial INPHARED2 display specification.

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36350 matching reference genomes out of 36350. Search and filters are active; download will follow after the fields are finalised.

INPHARED2 search results

The results table contains the selected original taxonomy, CheckV, TaxMyPhage and PhageLeads fields. It can be scrolled horizontally for the full record.

Accession ▼ Description Genome Length (bp) molGC (%) Host Baltimore Group Lowest Taxa Genus Sub-family Family Order Class Phylum Kingdom Realm Isolation Host CheckV quality CheckV MIUVIG quality CheckV completeness CheckV completeness method TaxMyPhage genus TaxMyPhage species TaxMyPhage message PhageLeads lifestyle PhageLeads problematic genes
PP989838Escherichia phage VTCCBPA_2117535842.262EscherichiaGroup I KuravirusKuravirusGordonclarkvirinaeMtkvariviridaeUnclassifiedCaudoviricetesUroviricotaHeunggongviraeDuplodnaviria Escherichia coliCompleteHigh-quality100.000DTR (high-confidence) KuravirusKuravirus new_nameCurrent ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus levellytic
PP988283Klebsiella phage KpS1113542244.634KlebsiellaGroup I MydovirusMydovirusVequintavirinaeUnclassifiedUnclassifiedCaudoviricetesUroviricotaHeunggongviraeDuplodnaviria Klebsiella pneumoniaeHigh-qualityHigh-quality91.720AAI-based (high-confidence) MydovirusMydovirus new_nameThe number of expected genera is different from the predicted number of genus clusters. It will require more manual curationlytic
PP988008Escherichia phage phiE31-25146843.954EscherichiaGroup I HanrivervirusHanrivervirusTempevirinaeDrexlerviridaeUnclassifiedCaudoviricetesUroviricotaHeunggongviraeDuplodnaviria Escherichia coli ek31-2High-qualityHigh-quality100.000AAI-based (high-confidence) HanrivervirusHanrivervirus karljaspersCurrent ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus levellytic
PP987475Pseudomonas phage ZAM-Pa996513955.021PseudomonasGroup I PbunavirusPbunavirusUnclassifiedLindbergviridaeUnclassifiedCaudoviricetesUroviricotaHeunggongviraeDuplodnaviria Pseudomonas aeruginosaHigh-qualityHigh-quality98.620AAI-based (high-confidence) PbunavirusPbunavirus R26Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus levellytic
PP987310Salmonella phage Manna17114135.253SalmonellaGroup I TequatrovirusTequatrovirusTevenvirinaeStraboviridaePantevenviralesCaudoviricetesUroviricotaHeunggongviraeDuplodnaviria Salmonella enterica subsp. entericaHigh-qualityHigh-quality100.000AAI-based (high-confidence) TequatrovirusTequatrovirus new_nameCurrent ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus levellytic
PP986400Aliivibrio phage vB_Alvi_H9054057242.463AliivibrioUnclassified UnclassifiedUnclassifiedUnclassifiedUnclassifiedUnclassifiedUnclassifiedUnclassifiedUnclassifiedUnclassified Allivibrio fischeri H905High-qualityHigh-quality95.010AAI-based (high-confidence) New_genusNew_speciesNo hits were found with the default settingslytic
PP982639Acinetobacter phage AB_SZL74306845.533AcinetobacterGroup I LokivirusLokivirusUnclassifiedUnclassifiedUnclassifiedCaudoviricetesUroviricotaHeunggongviraeDuplodnaviria Acinetobacter baumanniiCompleteHigh-quality100.000DTR (high-confidence) LokivirusLokivirus IMEAB3The number of expected genera is different from the predicted number of genus clusters. It will require more manual curationlytic
PP978974Pasteurella phage Pmp13804940.698PasteurellaUnclassified UnclassifiedUnclassifiedUnclassifiedUnclassifiedUnclassifiedUnclassifiedUnclassifiedUnclassifiedUnclassified Pasteurella multocida (capsular serotype A)High-qualityHigh-quality99.180AAI-based (high-confidence) WuhanvirusWuhanvirus new_nameCurrent ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus levellytic
PP978897Mycobacterium phage Espresso5182963.802MycobacteriumUnclassified UnclassifiedUnclassifiedUnclassifiedUnclassifiedUnclassifiedUnclassifiedUnclassifiedUnclassifiedUnclassified Mycobacterium smegmatis str. MC2 155High-qualityHigh-quality99.810AAI-based (high-confidence) FromanvirusFromanvirus new_nameThe number of expected genera is different from the predicted number of genus clusters. It will require more manual curationtemperateintegrase orf_36;immunity orf_66
PP978896Mycobacterium phage Schuy7085365.344MycobacteriumUnclassified UnclassifiedUnclassifiedUnclassifiedUnclassifiedUnclassifiedUnclassifiedUnclassifiedUnclassifiedUnclassified Mycobacterium smegmatis str. MC2 155High-qualityHigh-quality98.400AAI-based (high-confidence) CorndogvirusCorndogvirus vagabondCurrent ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus levellytic
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