INPHARED2
INPHARED2 is the new home of the INPHARED resource, providing a curated, regularly updated set of complete bacteriophage genomes with associated metadata and genome quality information, including CheckV assessments and taxonomy generated using taxMyPhage.
Building on the original database, INPHARED2 provides an expanded and improved reference resource for phage genomics; the updated resource and analysis are described in our INPHARED2 preprint. It provides an easy-to-use online search function alongside bulk data downloads.
Explore INPHARED2 data visually
Create interactive summaries of genome metadata and download the resulting figures.
Search INPHARED
Search by accession, description, host or taxonomy. The filters below reflect the initial INPHARED2 display specification.
36350 matching reference genomes out of 36350. Search and filters are active; download will follow after the fields are finalised.
INPHARED2 search results
The results table contains the selected original taxonomy, CheckV, TaxMyPhage and PhageLeads fields. It can be scrolled horizontally for the full record.
| Accession ▼ | Description | Genome Length (bp) | molGC (%) | Host | Baltimore Group | Lowest Taxa | Genus | Sub-family | Family | Order | Class | Phylum | Kingdom | Realm | Isolation Host | CheckV quality | CheckV MIUVIG quality | CheckV completeness | CheckV completeness method | TaxMyPhage genus | TaxMyPhage species | TaxMyPhage message | PhageLeads lifestyle | PhageLeads problematic genes |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| PQ010280 | Escherichia phage vB_EcoM_CQ615 | 39709 | 48.594 | Escherichia | Group I | Teseptimavirus | Teseptimavirus | Studiervirinae | Autotranscriptaviridae | Autographivirales | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Escherichia coli ETEC O6:K15 | Complete | High-quality | 100.000 | DTR (high-confidence) | Teseptimavirus | Teseptimavirus new_name | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | lytic | |
| PQ008975 | Pectobacterium phage Taid | 39941 | 46.797 | Pectobacterium | Group I | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Pectobacterium brasiliense 35.2 | High-quality | High-quality | 96.140 | AAI-based (high-confidence) | Frederiksbergvirus | Frederiksbergvirus pappous | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | lytic | |
| PQ008974 | Pectobacterium phage Sabo | 42167 | 46.202 | Pectobacterium | Group I | Frederiksbergvirus | Frederiksbergvirus | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Pectobacterium brasiliense 35.2 | High-quality | High-quality | 100.000 | AAI-based (high-confidence) | Frederiksbergvirus | Frederiksbergvirus sabo | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | lytic | |
| PQ008973 | Pectobacterium phage Pappous | 40850 | 46.563 | Pectobacterium | Group I | Frederiksbergvirus | Frederiksbergvirus | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Pectobacterium brasiliense 35.2 | High-quality | High-quality | 98.330 | AAI-based (high-confidence) | Frederiksbergvirus | Frederiksbergvirus pappous | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | lytic | |
| PQ008972 | Pectobacterium phage Koroua | 41346 | 46.442 | Pectobacterium | Group I | Frederiksbergvirus | Frederiksbergvirus | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Pectobacterium brasiliense 35.2 | High-quality | High-quality | 99.520 | AAI-based (high-confidence) | Frederiksbergvirus | Frederiksbergvirus koroua | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | lytic | |
| PQ008971 | Pectobacterium phage Amona | 42206 | 46.330 | Pectobacterium | Group I | Frederiksbergvirus | Frederiksbergvirus | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Pectobacterium brasiliense 35.2 | High-quality | High-quality | 100.000 | AAI-based (high-confidence) | Frederiksbergvirus | Frederiksbergvirus amona | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | lytic | |
| PQ002172 | Salmonella phage vB_Sen_SG_WM_SEW_9 | 41715 | 49.848 | Salmonella | Group I | Mesyanzhinovviridae | Unclassified | Unclassified | Mesyanzhinovviridae | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Salmonella enterica subsp. enterica serovar Enteritidis | Complete | High-quality | 100.000 | DTR (high-confidence) | Jerseyvirus | Jerseyvirus new_name | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | lytic | |
| PQ002171 | Salmonella phage vB_Sen_SG_WM_SEW_6S | 142099 | 45.787 | Salmonella | Group I | Demerecviridae | Unclassified | Unclassified | Demerecviridae | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Salmonella enterica subsp. enterica serovar Enteritidis | Complete | High-quality | 100.000 | DTR (high-confidence) | Seunavirus | Seunavirus new_name | The number of expected genera is different from the predicted number of genus clusters. It will require more manual curation | lytic | |
| PQ002170 | Salmonella phage vB_Sen_SG_WM_RUS_R7 | 142008 | 45.788 | Salmonella | Group I | Demerecviridae | Unclassified | Unclassified | Demerecviridae | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Salmonella enterica subsp. enterica serovar Enteritidis | Complete | High-quality | 100.000 | DTR (high-confidence) | Seunavirus | Seunavirus new_name | The number of expected genera is different from the predicted number of genus clusters. It will require more manual curation | lytic | |
| PQ002169 | Salmonella phage vB_Sen_SG_WM_RUS_R2 | 102553 | 38.835 | Salmonella | Group I | Demerecviridae | Unclassified | Unclassified | Demerecviridae | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Salmonella enterica subsp. enterica serovar Enteritidis | Complete | High-quality | 100.000 | DTR (high-confidence) | Tequintavirus | Tequintavirus new_name | The number of expected genera is different from the predicted number of genus clusters. It will require more manual curation | lytic |