INPHARED2

INPHARED2 is the new home of the INPHARED resource, providing a curated, regularly updated set of complete bacteriophage genomes with associated metadata and genome quality information, including CheckV assessments and taxonomy generated using taxMyPhage.

Building on the original database, INPHARED2 provides an expanded and improved reference resource for phage genomics; the updated resource and analysis are described in our INPHARED2 preprint. It provides an easy-to-use online search function alongside bulk data downloads.

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Create interactive summaries of genome metadata and download the resulting figures.

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Search INPHARED

Search by accession, description, host or taxonomy. The filters below reflect the initial INPHARED2 display specification.

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36350 matching reference genomes out of 36350. Search and filters are active; download will follow after the fields are finalised.

INPHARED2 search results

The results table contains the selected original taxonomy, CheckV, TaxMyPhage and PhageLeads fields. It can be scrolled horizontally for the full record.

Accession ▼	Description	Genome Length (bp)	molGC (%)	Host	Baltimore Group	Lowest Taxa	Genus	Sub-family	Family	Order	Class	Phylum	Kingdom	Realm	Isolation Host	CheckV quality	CheckV MIUVIG quality	CheckV completeness	CheckV completeness method	TaxMyPhage genus	TaxMyPhage species	TaxMyPhage message	PhageLeads lifestyle	PhageLeads problematic genes
PQ189286	Vibrio phage 10N.222.46.E12_PE001	14606	43.633	Vibrio	Unclassified	Unclassified	Unclassified	Unclassified	Unclassified	Vinavirales	Belvinaviricetes	Produgelaviricota	Abadenavirae	Varidnaviria	Vibrio cyclitrophicus 10N.222.46.E12	Low-quality	Genome-fragment	40.410	AAI-based (medium-confidence)	New_genus	New_species	No hits were found with the default settings	temperate	integrase orf_2
PQ189285	Vibrio phage 10N.222.45.E8_PE002	38445	44.370	Vibrio	Group I	Unclassified	Unclassified	Unclassified	Unclassified	Unclassified	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Vibrio cyclitrophicus 10N.222.45.E8	High-quality	High-quality	100.000	AAI-based (high-confidence)	New_genus	New_species	No hits were found with the default settings	temperate	integrase orf_2
PQ189284	Vibrio phage 10N.222.45.E8_PE001	38250	43.773	Vibrio	Group I	Unclassified	Unclassified	Unclassified	Unclassified	Unclassified	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Vibrio cyclitrophicus 10N.222.45.E8	High-quality	High-quality	94.310	HMM-based (lower-bound)	Canoevirus	Canoevirus new_name	Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level	temperate	integrase orf_10;cro orf_13
PQ187642	Raoultella phage vB_Rp_M26a	176318	41.851	Raoultella	Group I	Unclassified	Unclassified	Unclassified	Unclassified	Unclassified	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Raoultella planticola M26a	High-quality	High-quality	98.970	AAI-based (high-confidence)	Slopekvirus	Slopekvirus kp15	Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level	lytic
PQ186186	Salmonella phage vB_CECAV_048	45195	46.603	Salmonella	Group I	Skatevirus	Skatevirus	Unclassified	Unclassified	Unclassified	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Salmonella enterica subsp. enterica serovar Thyphimurium var. monophasic Copenhague	High-quality	High-quality	96.250	AAI-based (high-confidence)	Skatevirus	Skatevirus new_name	The number of expected genera is different from the predicted number of genus clusters. It will require more manual curation	lytic
PQ184838	Mycobacterium phage ResDef	50081	64.054	Mycobacterium	Group I	Unclassified	Unclassified	Unclassified	Unclassified	Unclassified	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Mycobacterium smegmatis str. MC2 155	High-quality	High-quality	100.000	AAI-based (high-confidence)	Veracruzvirus	Veracruzvirus veracruz	Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level	temperate	integrase orf_29;immunity orf_63
PQ184837	Gordonia phage ScarletRaider	92813	60.355	Gordonia	Group I	Unclassified	Unclassified	Unclassified	Unclassified	Unclassified	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Gordonia rubripertincta NRRL B-16540	High-quality	High-quality	100.000	AAI-based (high-confidence)	New_genus	New_species	Query is a new genus and species. You could try running again with if you larger distance	lytic
PQ184836	Mycobacterium phage Deb65	55767	61.553	Mycobacterium	Group I	Unclassified	Unclassified	Unclassified	Unclassified	Unclassified	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Mycobacterium smegmatis str. MC2 155	High-quality	High-quality	96.770	AAI-based (high-confidence)	Cheoctovirus	Cheoctovirus geralt	The number of expected genera is different from the predicted number of genus clusters. It will require more manual curation	temperate	integrase orf_38;immunity orf_40
PQ184835	Gordonia phage PantheRoc	53541	66.400	Gordonia	Group I	Unclassified	Unclassified	Unclassified	Unclassified	Unclassified	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Gordonia terrae 3612	High-quality	High-quality	100.000	AAI-based (high-confidence)	Baxterfoxvirus	Baxterfoxvirus new_name	The number of expected genera is different from the predicted number of genus clusters. It will require more manual curation	temperate	integrase orf_35;integrase orf_39;immunity orf_40;antirepressor orf_44
PQ184834	Gordonia phage BenoitCattle	77049	58.558	Gordonia	Group I	Unclassified	Unclassified	Unclassified	Unclassified	Unclassified	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Gordonia terrae CAG3	Complete	High-quality	100.000	DTR (high-confidence)	Montyvirus	Montyvirus new_name	Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level	lytic