INPHARED2
INPHARED2
INPHARED2 is the new home of the INPHARED resource, providing a curated, regularly updated set of complete bacteriophage genomes with associated metadata and genome quality information, including CheckV assessments and taxonomy generated using taxMyPhage.
Building on the original database, INPHARED2 provides an expanded and improved reference resource for phage genomics; the updated resource and analysis are described in our INPHARED2 preprint. It provides an easy-to-use online search function alongside bulk data downloads.
Explore INPHARED2 data visually
Create interactive summaries of genome metadata and download the resulting figures.
Search INPHARED
Search by accession, description, host or taxonomy. The filters below reflect the initial INPHARED2 display specification.
36350 matching reference genomes out of 36350. Search and filters are active; download will follow after the fields are finalised.
INPHARED2 search results
The results table contains the selected original taxonomy, CheckV, TaxMyPhage and PhageLeads fields. It can be scrolled horizontally for the full record.
| Accession ▼ | Description | Genome Length (bp) | molGC (%) | Host | Baltimore Group | Lowest Taxa | Genus | Sub-family | Family | Order | Class | Phylum | Kingdom | Realm | Isolation Host | CheckV quality | CheckV MIUVIG quality | CheckV completeness | CheckV completeness method | TaxMyPhage genus | TaxMyPhage species | TaxMyPhage message | PhageLeads lifestyle | PhageLeads problematic genes |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| PQ197425 | Raoultella phage vB_Rp_P25a | 40739 | 53.202 | Raoultella | Group I | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Raoultella planticola P25a | Complete | High-quality | 100.000 | DTR (high-confidence) | Przondovirus | Przondovirus KP32i192 | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | lytic | |
| PQ197424 | Raoultella phage vB_Ro_S7a | 39661 | 53.219 | Raoultella | Group I | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Raoultella ornithinolytica S7a | Complete | High-quality | 100.000 | DTR (high-confidence) | Przondovirus | Przondovirus new_name | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | lytic | |
| PQ197423 | Raoultella phage vB_Ro_P3a | 44832 | 45.102 | Raoultella | Group I | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Raoultella ornithinolytica P3a | Complete | High-quality | 100.000 | DTR (high-confidence) | Rodentiumvirus | Rodentiumvirus P101117UKE2 | The number of expected genera is different from the predicted number of genus clusters. It will require more manual curation | lytic | |
| PQ197041 | Morganella phage Henu15 | 52795 | 41.640 | Morganella | Group I | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Morganella morganii JX1 | High-quality | High-quality | 94.970 | AAI-based (high-confidence) | New_genus | New_species | No hits were found with the default settings | lytic | |
| PQ195596 | Leptolyngbya phage Dor1 | 41226 | 52.302 | Leptolyngbya | Group I | Morrisvirus | Morrisvirus | Unclassified | Saffermanviridae | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Leptolyngbya boryana IU 594 | Complete | High-quality | 100.000 | DTR (high-confidence) | Morrisvirus | Morrisvirus new_name | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | lytic | |
| PQ189589 | Salmonella phage Salmp-p7 | 60066 | 56.207 | Salmonella | Group I | Chivirus | Chivirus | Unclassified | Casjensviridae | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Salmonella enterica subsp. enterica serovar Enteritidis | High-quality | High-quality | 93.060 | AAI-based (high-confidence) | Chivirus | Chivirus new_name | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | lytic | |
| PQ189390 | Vibrio phage ZF14_PE001 | 34020 | 44.659 | Vibrio | Group I | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Vibrio cyclitrophicus ZF14 | High-quality | High-quality | 100.000 | AAI-based (high-confidence) | New_genus | New_species | Query is a new genus and species. You could try running again with if you larger distance | temperate | integrase orf_43 |
| PQ189389 | Vibrio phage 1F53_PE004 | 14374 | 44.226 | Vibrio | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Vinavirales | Belvinaviricetes | Produgelaviricota | Abadenavirae | Varidnaviria | Vibrio cyclitrophicus 1F53 | Low-quality | Genome-fragment | 14.200 | HMM-based (lower-bound) | New_genus | New_species | No hits were found with the default settings | temperate | integrase orf_2 |
| PQ189388 | Vibrio phage 1F53_PE003 | 32461 | 44.543 | Vibrio | Group I | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Vibrio cyclitrophicus 1F53 | High-quality | High-quality | 98.920 | AAI-based (high-confidence) | New_genus | New_species | No hits were found with the default settings | temperate | integrase orf_1 |
| PQ189387 | Vibrio phage 1F53_PE002 | 8621 | 41.724 | Vibrio | Group II | Unclassified | Unclassified | Unclassified | Unclassified | Tubulavirales | Faserviricetes | Hofneiviricota | Loebvirae | Floreoviria | Vibrio cyclitrophicus 1F53 | High-quality | High-quality | 92.940 | AAI-based (medium-confidence) | New_genus | New_species | No hits were found with the default settings | lytic |