Becky Mayer Centre for Phage Research
BMCPR PhageBank
INPHARED2

INPHARED2

INPHARED2 is the new home of the INPHARED resource, providing a curated, regularly updated set of complete bacteriophage genomes with associated metadata and genome quality information, including CheckV assessments and taxonomy generated using taxMyPhage.

Building on the original database, INPHARED2 provides an expanded and improved reference resource for phage genomics; the updated resource and analysis are described in our INPHARED2 preprint. It provides an easy-to-use online search function alongside bulk data downloads.

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Search by accession, description, host or taxonomy. The filters below reflect the initial INPHARED2 display specification.

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36350 matching reference genomes out of 36350. Search and filters are active; download will follow after the fields are finalised.

INPHARED2 search results

The results table contains the selected original taxonomy, CheckV, TaxMyPhage and PhageLeads fields. It can be scrolled horizontally for the full record.

Accession ▼ Description Genome Length (bp) molGC (%) Host Baltimore Group Lowest Taxa Genus Sub-family Family Order Class Phylum Kingdom Realm Isolation Host CheckV quality CheckV MIUVIG quality CheckV completeness CheckV completeness method TaxMyPhage genus TaxMyPhage species TaxMyPhage message PhageLeads lifestyle PhageLeads problematic genes
PQ244019Streptomyces phage Loofah5257466.997StreptomycesGroup I UnclassifiedUnclassifiedUnclassifiedUnclassifiedUnclassifiedCaudoviricetesUroviricotaHeunggongviraeDuplodnaviria Streptomyces lividans JI 1326High-qualityHigh-quality100.000AAI-based (high-confidence) ArequatrovirusArequatrovirus paedoreThe number of expected genera is different from the predicted number of genus clusters. It will require more manual curationtemperateimmunity orf_29;integrase orf_53
PQ244018Arthrobacter phage Heylee5890753.114ArthrobacterGroup I UnclassifiedUnclassifiedUnclassifiedUnclassifiedUnclassifiedCaudoviricetesUroviricotaHeunggongviraeDuplodnaviria Arthrobacter sp. ATCC 21022CompleteHigh-quality100.000DTR (high-confidence) AmigovirusAmigovirus new_nameThe number of expected genera is different from the predicted number of genus clusters. It will require more manual curationlytic
PQ244017Arthrobacter phage Amavida5890753.109ArthrobacterGroup I UnclassifiedUnclassifiedUnclassifiedUnclassifiedUnclassifiedCaudoviricetesUroviricotaHeunggongviraeDuplodnaviria Arthrobacter sp. ATCC 21022CompleteHigh-quality100.000DTR (high-confidence) AmigovirusAmigovirus new_nameThe number of expected genera is different from the predicted number of genus clusters. It will require more manual curationlytic
PQ244016Mycobacterium phage Blubba15890764.669MycobacteriumGroup I UnclassifiedUnclassifiedUnclassifiedUnclassifiedUnclassifiedCaudoviricetesUroviricotaHeunggongviraeDuplodnaviria Mycobacterium smegmatis str. MC2 155High-qualityHigh-quality99.560AAI-based (high-confidence) BixzunavirusBixzunavirus cane17Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus levellytic
PQ244015Gordonia phage Hamood5091967.034GordoniaGroup I UnclassifiedUnclassifiedUnclassifiedUnclassifiedUnclassifiedCaudoviricetesUroviricotaHeunggongviraeDuplodnaviria Gordonia terrae CAG3High-qualityHigh-quality100.000AAI-based (high-confidence) BetterkatzvirusBetterkatzvirus new_nameCurrent ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus leveltemperateintegrase orf_37
PQ244014Arthrobacter phage ProfFrink5447851.676ArthrobacterGroup I UnclassifiedUnclassifiedUnclassifiedUnclassifiedUnclassifiedCaudoviricetesUroviricotaHeunggongviraeDuplodnaviria Arthrobacter globiformis B-2979High-qualityHigh-quality99.980AAI-based (high-confidence) New_genusNew_speciesNo hits were found with the default settingslytic
PQ244013Streptomyces phage KentuckyRacer13379149.285StreptomycesGroup I UnclassifiedUnclassifiedUnclassifiedUnclassifiedUnclassifiedCaudoviricetesUroviricotaHeunggongviraeDuplodnaviria Streptomyces griseus ATCC 10137CompleteHigh-quality100.000DTR (high-confidence) KarimacvirusKarimacvirus karimacCurrent ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus levellytic
PQ244012Arthrobacter phage Hum254269559.541ArthrobacterGroup I UnclassifiedUnclassifiedUnclassifiedUnclassifiedUnclassifiedCaudoviricetesUroviricotaHeunggongviraeDuplodnaviria Arthrobacter globiformis B-2979Medium-qualityGenome-fragment59.390HMM-based (lower-bound) New_genusNew_speciesNo hits were found with the default settingstemperateintegrase orf_33
PQ244011Mycobacterium phage Fastidio5583961.563MycobacteriumGroup I UnclassifiedUnclassifiedUnclassifiedUnclassifiedUnclassifiedCaudoviricetesUroviricotaHeunggongviraeDuplodnaviria Mycobacterium smegmatis str. MC2 155High-qualityHigh-quality96.960AAI-based (high-confidence) CheoctovirusCheoctovirus new_nameThe number of expected genera is different from the predicted number of genus clusters. It will require more manual curationtemperateintegrase orf_43;antirepressor orf_45
PQ244010Microbacterium phage Stem1698168.924MicrobacteriumGroup I UnclassifiedUnclassifiedUnclassifiedUnclassifiedUnclassifiedCaudoviricetesUroviricotaHeunggongviraeDuplodnaviria Microbacterium foliorum NRRL B-24224High-qualityHigh-quality97.630AAI-based (high-confidence) PaopuvirusPaopuvirus nobelCurrent ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus levellytic
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