INPHARED2

INPHARED2 is the new home of the INPHARED resource, providing a curated, regularly updated set of complete bacteriophage genomes with associated metadata and genome quality information, including CheckV assessments and taxonomy generated using taxMyPhage.

Building on the original database, INPHARED2 provides an expanded and improved reference resource for phage genomics; the updated resource and analysis are described in our INPHARED2 preprint. It provides an easy-to-use online search function alongside bulk data downloads.

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Create interactive summaries of genome metadata and download the resulting figures.

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Search INPHARED

Search by accession, description, host or taxonomy. The filters below reflect the initial INPHARED2 display specification.

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36350 matching reference genomes out of 36350. Search and filters are active; download will follow after the fields are finalised.

INPHARED2 search results

The results table contains the selected original taxonomy, CheckV, TaxMyPhage and PhageLeads fields. It can be scrolled horizontally for the full record.

Accession ▼	Description	Genome Length (bp)	molGC (%)	Host	Baltimore Group	Lowest Taxa	Genus	Sub-family	Family	Order	Class	Phylum	Kingdom	Realm	Isolation Host	CheckV quality	CheckV MIUVIG quality	CheckV completeness	CheckV completeness method	TaxMyPhage genus	TaxMyPhage species	TaxMyPhage message	PhageLeads lifestyle
PQ306523	Klebsiella phage vB_KpnP_BEH219IMT16	41076	53.141	Klebsiella	Group I	Przondovirus	Przondovirus	Studiervirinae	Autotranscriptaviridae	Autographivirales	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Klebsiella pneumoniae subsp. pneumoniae 33495	Complete	High-quality	100.000	DTR (high-confidence)	Przondovirus	Przondovirus new_name	Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level	lytic
PQ306522	Klebsiella phage vB_KpnP_TAR218IMT15	38731	50.977	Klebsiella	Group I	Teetrevirus	Teetrevirus	Studiervirinae	Autotranscriptaviridae	Autographivirales	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Klebsiella pneumoniae subsp. pneumoniae 33495	Complete	High-quality	100.000	DTR (high-confidence)	Teetrevirus	Teetrevirus new_name	Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level	lytic
PQ306521	Klebsiella phage vB_KpnP_PKR217IMT14	41453	53.323	Klebsiella	Group I	Przondovirus	Przondovirus	Studiervirinae	Autotranscriptaviridae	Autographivirales	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Klebsiella pneumoniae subsp. pneumoniae 33495	Complete	High-quality	100.000	DTR (high-confidence)	Przondovirus	Przondovirus new_name	Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level	lytic
PQ306520	Klebsiella phage vB_KpnP_BM216IMT13	41545	53.130	Klebsiella	Group I	Przondovirus	Przondovirus	Studiervirinae	Autotranscriptaviridae	Autographivirales	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Klebsiella pneumoniae subsp. pneumoniae 33495	Complete	High-quality	100.000	DTR (high-confidence)	Przondovirus	Przondovirus new_name	Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level	lytic
PQ306519	Staphylococcus phage vB_SauM_TAR178IMT10	146379	30.155	Staphylococcus	Unclassified	Unclassified	Unclassified	Unclassified	Unclassified	Unclassified	Unclassified	Unclassified	Unclassified	Unclassified	Staphylococcus aureus 6571	High-quality	High-quality	100.000	AAI-based (high-confidence)	Kayvirus	Kayvirus P108	Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level	lytic
PQ306518	Staphylococcus phage vB_SauM_NM1511IMT7	140896	30.246	Staphylococcus	Group I	Kayvirus	Kayvirus	Twortvirinae	Herelleviridae	Unclassified	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Staphylococcus aureus 3750	High-quality	High-quality	99.520	AAI-based (high-confidence)	Kayvirus	Kayvirus new_name	Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level	lytic
PQ306517	Enterococcus phage vB_EfaM_BM96IMT3	148238	36.951	Enterococcus	Group I	Schiekvirus	Schiekvirus	Brockvirinae	Herelleviridae	Unclassified	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Enterococcus faecium EF	High-quality	High-quality	97.100	AAI-based (high-confidence)	Schiekvirus	Schiekvirus new_name	Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level	lytic
PQ306516	Enterococcus phage vB_EfaS_BM86IMT1	82059	29.765	Enterococcus	Unclassified	Unclassified	Unclassified	Unclassified	Unclassified	Unclassified	Unclassified	Unclassified	Unclassified	Unclassified	Enterococcus faecium IHBB 9435	High-quality	High-quality	93.700	AAI-based (high-confidence)	New_genus	New_species	No hits were found with the default settings	lytic
PQ306468	Salmonella phage Phylax-28	40989	57.811	Salmonella	Group I	Ghunavirus	Ghunavirus	Studiervirinae	Autotranscriptaviridae	Autographivirales	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Salmonella sp.	High-quality	High-quality	100.000	AAI-based (high-confidence)	Ghunavirus	Ghunavirus new_name	Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level	lytic
PQ305824	Pseudomonas phage PAW33	45269	52.612	Pseudomonas	Unclassified	Unclassified	Unclassified	Unclassified	Unclassified	Unclassified	Unclassified	Unclassified	Unclassified	Unclassified	Pseudomonas aeruginosa ATCC 27853	High-quality	High-quality	99.820	AAI-based (high-confidence)	Bruynoghevirus	Bruynoghevirus new_name	Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level	lytic