INPHARED2

INPHARED2 is the new home of the INPHARED resource, providing a curated, regularly updated set of complete bacteriophage genomes with associated metadata and genome quality information, including CheckV assessments and taxonomy generated using taxMyPhage.

Building on the original database, INPHARED2 provides an expanded and improved reference resource for phage genomics; the updated resource and analysis are described in our INPHARED2 preprint. It provides an easy-to-use online search function alongside bulk data downloads.

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Create interactive summaries of genome metadata and download the resulting figures.

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Search INPHARED

Search by accession, description, host or taxonomy. The filters below reflect the initial INPHARED2 display specification.

Host (NCBI)

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Genus (TaxMyPhage)

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36350 matching reference genomes out of 36350. Search and filters are active; download will follow after the fields are finalised.

INPHARED2 search results

The results table contains the selected original taxonomy, CheckV, TaxMyPhage and PhageLeads fields. It can be scrolled horizontally for the full record.

Accession ▼	Description	Genome Length (bp)	molGC (%)	Host	Baltimore Group	Lowest Taxa	Genus	Sub-family	Family	Order	Class	Phylum	Kingdom	Realm	Isolation Host	CheckV quality	CheckV MIUVIG quality	CheckV completeness	CheckV completeness method	TaxMyPhage genus	TaxMyPhage species	TaxMyPhage message	PhageLeads lifestyle	PhageLeads problematic genes
PQ471516	Escherichia phage Turkey5	351311	36.450	Escherichia	Unclassified	Unclassified	Unclassified	Unclassified	Unclassified	Unclassified	Unclassified	Unclassified	Unclassified	Unclassified	Escherichia coli Tur5	High-quality	High-quality	95.760	AAI-based (high-confidence)	New_genus	New_species	Query is a new genus and species. You could try running again with if you larger distance	temperate	cro orf_60
PQ471515	Escherichia phage Turkey3	361208	35.529	Escherichia	Unclassified	Unclassified	Unclassified	Unclassified	Unclassified	Unclassified	Unclassified	Unclassified	Unclassified	Unclassified	Escherichia coli Tur3	High-quality	High-quality	95.650	AAI-based (high-confidence)	Asteriusvirus	Asteriusvirus new_name	Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level	lytic
PQ471460	Escherichia phage vB_EcoM_JE01	169123	35.511	Escherichia	Group I	Tequatrovirus	Tequatrovirus	Tevenvirinae	Straboviridae	Pantevenvirales	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Escherichia coli (ETEC) U74 (enterotoxigenic)	High-quality	High-quality	100.000	AAI-based (high-confidence)	Tequatrovirus	Tequatrovirus new_name	Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level	lytic
PQ466445	Pseudomonas phage VAC3	37663	64.212	Pseudomonas	Unclassified	Unclassified	Unclassified	Unclassified	Unclassified	Unclassified	Unclassified	Unclassified	Unclassified	Unclassified	Pseudomonas aeruginosa PA14	High-quality	High-quality	98.970	AAI-based (high-confidence)	Casadabanvirus	Casadabanvirus JBD69	Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level	lytic
PQ466444	Pseudomonas phage VAC1	36601	64.080	Pseudomonas	Unclassified	Unclassified	Unclassified	Unclassified	Unclassified	Unclassified	Unclassified	Unclassified	Unclassified	Unclassified	Pseudomonas aeruginosa PA14	High-quality	High-quality	96.190	AAI-based (high-confidence)	Casadabanvirus	Casadabanvirus JBD69	Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level	lytic
PQ465216	Salmonella phage BUCT_XGG_PSM_3377	47146	45.891	Salmonella	Group I	Skatevirus	Skatevirus	Unclassified	Unclassified	Unclassified	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Salmonella enterica subsp. enterica serovar Typhimurium	High-quality	High-quality	100.000	AAI-based (high-confidence)	Skatevirus	Skatevirus new_name	The number of expected genera is different from the predicted number of genus clusters. It will require more manual curation	lytic
PQ464790	Vibrio phage vB_VcaP_R24D	44258	43.610	Vibrio	Group I	Unclassified	Unclassified	Unclassified	Unclassified	Autographivirales	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Vibrio campbellii CAIM 519 = NBRC 15631 = ATCC 25920	High-quality	High-quality	100.000	AAI-based (high-confidence)	Trungvirus	Trungvirus new_name	Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level	lytic
PQ464789	Vibrio phage vB_VcaP_R25D	43376	43.683	Vibrio	Group I	Unclassified	Unclassified	Unclassified	Unclassified	Autographivirales	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Vibrio campbellii CAIM 519 = NBRC 15631 = ATCC 25920	High-quality	High-quality	97.990	AAI-based (high-confidence)	Trungvirus	Trungvirus new_name	Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level	lytic
PQ464787	Fusobacterium phage TCUFN3	127354	25.695	Fusobacterium	Group I	Unclassified	Unclassified	Unclassified	Unclassified	Unclassified	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Fusobacterium nucleatum	High-quality	High-quality	97.280	AAI-based (high-confidence)	New_genus	New_species	Query is a new genus and species. You could try running again with if you larger distance	temperate	antirepressor orf_30;antirepressor orf_45;antirepressor orf_91;antirepressor orf_155
PQ464628	Escherichia phage MirsaeidiM_Esher2	40547	49.977	Escherichia	Group I	Kayfunavirus	Kayfunavirus	Studiervirinae	Autotranscriptaviridae	Autographivirales	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Escherichia coli	Complete	High-quality	100.000	DTR (high-confidence)	Kayfunavirus	Kayfunavirus new_name	The number of expected genera is different from the predicted number of genus clusters. It will require more manual curation	lytic