INPHARED2
INPHARED2 is the new home of the INPHARED resource, providing a curated, regularly updated set of complete bacteriophage genomes with associated metadata and genome quality information, including CheckV assessments and taxonomy generated using taxMyPhage.
Building on the original database, INPHARED2 provides an expanded and improved reference resource for phage genomics; the updated resource and analysis are described in our INPHARED2 preprint. It provides an easy-to-use online search function alongside bulk data downloads.
Explore INPHARED2 data visually
Create interactive summaries of genome metadata and download the resulting figures.
Search INPHARED
Search by accession, description, host or taxonomy. The filters below reflect the initial INPHARED2 display specification.
36350 matching reference genomes out of 36350. Search and filters are active; download will follow after the fields are finalised.
INPHARED2 search results
The results table contains the selected original taxonomy, CheckV, TaxMyPhage and PhageLeads fields. It can be scrolled horizontally for the full record.
| Accession ▼ | Description | Genome Length (bp) | molGC (%) | Host | Baltimore Group | Lowest Taxa | Genus | Sub-family | Family | Order | Class | Phylum | Kingdom | Realm | Isolation Host | CheckV quality | CheckV MIUVIG quality | CheckV completeness | CheckV completeness method | TaxMyPhage genus | TaxMyPhage species | TaxMyPhage message | PhageLeads lifestyle | PhageLeads problematic genes |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| PQ479935 | Salmonella phage PJNS002 | 5486 | 46.063 | Salmonella | Group II | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Microviricetes | Phixviricota | Sangervirae | Floreoviria | Salmonella sp. | High-quality | High-quality | 93.620 | AAI-based (high-confidence) | New_genus | New_species | No hits were found with the default settings | unknown | |
| PQ479934 | Salmonella phage PJNS001 | 5386 | 44.987 | Salmonella | Group II | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Microviricetes | Phixviricota | Sangervirae | Floreoviria | Salmonella sp. | High-quality | High-quality | 91.660 | AAI-based (high-confidence) | New_genus | New_species | No hits were found with the default settings | unknown | |
| PQ479256 | Salmonella phage fKVCA3 | 87299 | 38.911 | Salmonella | Group I | Felixounavirus | Felixounavirus | Ounavirinae | Andersonviridae | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Salmonella enterica | Complete | High-quality | 100.000 | DTR (high-confidence) | Felixounavirus | Felixounavirus new_name | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | lytic | |
| PQ478073 | Escherichia phage MCEC3 | 348694 | 34.046 | Escherichia | Group I | Asteriusvirus | Asteriusvirus | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Escherichia coli 30 | Complete | High-quality | 100.000 | DTR (high-confidence) | Asteriusvirus | Asteriusvirus new_name | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | lytic | |
| PQ476232 | Serratia phage NAU_PAR | 52894 | 59.307 | Serratia | Group I | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Serratia marcescens | Medium-quality | Genome-fragment | 89.450 | AAI-based (high-confidence) | New_genus | New_species | No hits were found with the default settings | temperate | integrase orf_40 |
| PQ476032 | Xanthomonas phage phiXacJX1 | 44403 | 53.526 | Xanthomonas | Group I | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Xanthomonas citri pv. citri | High-quality | High-quality | 100.000 | AAI-based (high-confidence) | Klementvirus | Klementvirus new_name | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | lytic | |
| PQ476011 | Escherichia phage PhiNW-E1 | 45197 | 44.881 | Escherichia | Group I | Unclassified | Unclassified | Unclassified | Unclassified | Autographivirales | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Escherichia coli K1 LU_100 | High-quality | High-quality | 100.000 | AAI-based (high-confidence) | Vectrevirus | Vectrevirus new_name | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | lytic | |
| PQ476010 | Escherichia phage PhiNW-B1 | 40478 | 50.017 | Escherichia | Group I | Unclassified | Unclassified | Unclassified | Unclassified | Autographivirales | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Escherichia coli K1 LU_100 | High-quality | High-quality | 100.000 | AAI-based (high-confidence) | Kayfunavirus | Kayfunavirus new_name | The number of expected genera is different from the predicted number of genus clusters. It will require more manual curation | lytic | |
| PQ476009 | Escherichia phage Phi100-A | 44377 | 44.895 | Escherichia | Group I | Unclassified | Unclassified | Unclassified | Unclassified | Autographivirales | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Escherichia coli K1 LU_100 | High-quality | High-quality | 99.490 | AAI-based (high-confidence) | Vectrevirus | Vectrevirus PUTI89UKE2 | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | lytic | |
| PQ474795 | Escherichia phage vB_Eco_AMO_3701M | 45294 | 50.726 | Escherichia | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Escherichia coli | High-quality | High-quality | 100.000 | AAI-based (high-confidence) | Kagunavirus | Kagunavirus new_name | The number of expected genera is different from the predicted number of genus clusters. It will require more manual curation | lytic |