Becky Mayer Centre for Phage Research
BMCPR PhageBank
INPHARED2

INPHARED2

INPHARED2 is the new home of the INPHARED resource, providing a curated, regularly updated set of complete bacteriophage genomes with associated metadata and genome quality information, including CheckV assessments and taxonomy generated using taxMyPhage.

Building on the original database, INPHARED2 provides an expanded and improved reference resource for phage genomics; the updated resource and analysis are described in our INPHARED2 preprint. It provides an easy-to-use online search function alongside bulk data downloads.

Search INPHARED

Search by accession, description, host or taxonomy. The filters below reflect the initial INPHARED2 display specification.

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36350 matching reference genomes out of 36350. Search and filters are active; download will follow after the fields are finalised.

INPHARED2 search results

The results table contains the selected original taxonomy, CheckV, TaxMyPhage and PhageLeads fields. It can be scrolled horizontally for the full record.

Accession ▼ Description Genome Length (bp) molGC (%) Host Baltimore Group Lowest Taxa Genus Sub-family Family Order Class Phylum Kingdom Realm Isolation Host CheckV quality CheckV MIUVIG quality CheckV completeness CheckV completeness method TaxMyPhage genus TaxMyPhage species TaxMyPhage message PhageLeads lifestyle PhageLeads problematic genes
PQ492660Limnohabitans phage YIMV220614074964.757LimnohabitansGroup I UnclassifiedUnclassifiedUnclassifiedUnclassifiedAutographiviralesCaudoviricetesUroviricotaHeunggongviraeDuplodnaviria Limnohabitans sp. YIMB22184CompleteHigh-quality100.000DTR (high-confidence) New_genusNew_speciesNo hits were found with the default settingstemperateintegrase orf_16
PQ492659Limnohabitans phage DC333904854.290LimnohabitansGroup II InoviridaeUnclassifiedUnclassifiedInoviridaeTubulaviralesFaserviricetesHofneiviricotaLoebviraeFloreoviria Limnohabitans sp. DCL3CompleteHigh-quality100.000DTR (high-confidence) New_genusNew_speciesNo hits were found with the default settingstemperatecro orf_27
PQ492658Limnohabitans phage DC317620937.580LimnohabitansGroup I PakpunavirusPakpunavirusSkurskavirinaeVandenendeviridaeUnclassifiedCaudoviricetesUroviricotaHeunggongviraeDuplodnaviria Limnohabitans sp. DCL3CompleteHigh-quality100.000DTR (high-confidence) New_genusNew_speciesNo hits were found with the default settingstemperateantirepressor orf_52
PQ492290Klebsiella phage vB_KpnM_p451517436941.930KlebsiellaGroup I UnclassifiedUnclassifiedUnclassifiedUnclassifiedUnclassifiedCaudoviricetesUroviricotaHeunggongviraeDuplodnaviria Klebsiella pneumoniae 4515High-qualityHigh-quality97.870AAI-based (high-confidence) SlopekvirusSlopekvirus kp15Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus levellytic
PQ492289Klebsiella phage vB_KpnS_p472711087549.296KlebsiellaGroup I UnclassifiedUnclassifiedUnclassifiedUnclassifiedUnclassifiedCaudoviricetesUroviricotaHeunggongviraeDuplodnaviria Klebsiella pneumoniae 4727High-qualityHigh-quality100.000AAI-based (high-confidence) WestmeadvirusWestmeadvirus new_nameThe number of expected genera is different from the predicted number of genus clusters. It will require more manual curationlytic
PQ492278Pseudomonas phage PaCCP26633355.616PseudomonasGroup I PbunavirusPbunavirusUnclassifiedLindbergviridaeUnclassifiedCaudoviricetesUroviricotaHeunggongviraeDuplodnaviria Pseudomonas aeruginosaHigh-qualityHigh-quality100.000AAI-based (high-confidence) PbunavirusPbunavirus LS1Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus levellytic
PQ492277Pseudomonas phage PaCCP14317654.452PseudomonasGroup I SeptimatrevirusSeptimatrevirusJondennisvirinaeUnclassifiedUnclassifiedCaudoviricetesUroviricotaHeunggongviraeDuplodnaviria Pseudomonas aeruginosaHigh-qualityHigh-quality100.000AAI-based (high-confidence) SeptimatrevirusSeptimatrevirus new_nameCurrent ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus levellytic
PQ492162Stenotrophomonas phage SBP7phi14307359.891StenotrophomonasUnclassified UnclassifiedUnclassifiedUnclassifiedUnclassifiedUnclassifiedUnclassifiedUnclassifiedUnclassifiedUnclassified Stenotrophomonas maltophiliaHigh-qualityHigh-quality100.000AAI-based (high-confidence) PonderosavirusPonderosavirus new_nameCurrent ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus levellytic
PQ492161Stenotrophomonas phage SBP4phi14298659.882StenotrophomonasUnclassified UnclassifiedUnclassifiedUnclassifiedUnclassifiedUnclassifiedUnclassifiedUnclassifiedUnclassifiedUnclassified Stenotrophomonas maltophiliaHigh-qualityHigh-quality100.000AAI-based (high-confidence) PonderosavirusPonderosavirus new_nameCurrent ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus levellytic
PQ492160Stenotrophomonas phage SBP6phi14299459.897StenotrophomonasUnclassified UnclassifiedUnclassifiedUnclassifiedUnclassifiedUnclassifiedUnclassifiedUnclassifiedUnclassifiedUnclassified Stenotrophomonas maltophiliaHigh-qualityHigh-quality100.000AAI-based (high-confidence) PonderosavirusPonderosavirus new_nameCurrent ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus levellytic
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