INPHARED2
INPHARED2 is the new home of the INPHARED resource, providing a curated, regularly updated set of complete bacteriophage genomes with associated metadata and genome quality information, including CheckV assessments and taxonomy generated using taxMyPhage.
Building on the original database, INPHARED2 provides an expanded and improved reference resource for phage genomics; the updated resource and analysis are described in our INPHARED2 preprint. It provides an easy-to-use online search function alongside bulk data downloads. The online database was last updated on 03 October 2026
Explore INPHARED2 data visually
Create interactive summaries of genome metadata and download the resulting figures.
Search INPHARED
Search by accession, description, host or taxonomy. The filters below reflect the initial INPHARED2 display specification.
37387 matching reference genomes out of 37387. Search and filters are active; download will follow after the fields are finalised.
INPHARED2 search results
The results table contains the selected original taxonomy, CheckV, TaxMyPhage and PhageLeads fields. It can be scrolled horizontally for the full record.
| Accession ▼ | Description | Genome Length (bp) | molGC (%) | Host | Baltimore Group | Lowest Taxa | Genus | Sub-family | Family | Order | Class | Phylum | Kingdom | Realm | Isolation Host | CheckV quality | CheckV MIUVIG quality | CheckV completeness | CheckV completeness method | TaxMyPhage genus | TaxMyPhage species | TaxMyPhage message | PhageLeads lifestyle | PhageLeads problematic genes |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| PZ725524 | Agrobacterium phage Porrex | 45226 | 54.095 | Agrobacterium | Group I | Alfirinvirus | Alfirinvirus | Dunnvirinae | Unclassified | Autographivirales | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Agrobacteriun tumefaciens A016 | High-quality | High-quality | 99.570 | AAI-based (high-confidence) | lytic | ||||
| PZ725436 | Bacillus phage vB_BC_ZCBC17 | 157816 | 39.671 | Bacillus | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Bacillus cereus | High-quality | High-quality | 98.930 | AAI-based (high-confidence) | lytic | ||||
| PZ725262 | Escherichia phage BP1 | 43470 | 43.662 | Escherichia | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Escherichia coli K-12 | Complete | High-quality | 100.000 | DTR (high-confidence) | lytic | ||||
| PZ721903 | Escherichia phage Lab05 | 49628 | 45.359 | Escherichia | Group I | Tunavirus | Tunavirus | Tunavirinae | Drexlerviridae | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Escherichia coli | High-quality | High-quality | 99.090 | AAI-based (high-confidence) | Tunavirus | Tunavirus SH2 | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | lytic | |
| PZ721902 | Escherichia phage Lab02 | 44624 | 43.676 | Escherichia | Group I | Christensenvirus | Christensenvirus | Braunvirinae | Drexlerviridae | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Escherichia coli | High-quality | High-quality | 90.910 | AAI-based (high-confidence) | New_genus | New_species | Query is a new genus and species. You could try running again with if you larger distance | lytic | |
| PZ721830 | Klebsiella phage RHTM-02 | 166000 | 39.674 | Klebsiella | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Klebsiella pneumoniae | High-quality | High-quality | 98.230 | AAI-based (high-confidence) | Jiaodavirus | Jiaodavirus new_name | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | lytic | |
| PZ716018 | Vibrio phage Ushijima | 34423 | 45.624 | Vibrio | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Vibrio coralliilyticus OCN008 | High-quality | High-quality | 99.160 | AAI-based (high-confidence) | New_genus | New_species | No hits were found with the default settings | lytic | |
| PZ716017 | Vibrio phage Kane | 55994 | 44.687 | Vibrio | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Vibrio coralliilyticus OCN008 | High-quality | High-quality | 95.270 | AAI-based (medium-confidence) | New_genus | New_species | No hits were found with the default settings | lytic | |
| PZ716016 | Vibrio phage Kolob | 34556 | 45.286 | Vibrio | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Vibrio coralliilyticus OCN008 | High-quality | High-quality | 99.550 | AAI-based (high-confidence) | New_genus | New_species | No hits were found with the default settings | temperate | integrase orf_6 |
| PZ716015 | Vibrio phage Satoshi | 34888 | 45.147 | Vibrio | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Vibrio coralliilyticus OCN008 | High-quality | High-quality | 100.000 | AAI-based (high-confidence) | New_genus | New_species | No hits were found with the default settings | temperate | integrase orf_1 |