INPHARED2
INPHARED2 is the new home of the INPHARED resource, providing a curated, regularly updated set of complete bacteriophage genomes with associated metadata and genome quality information, including CheckV assessments and taxonomy generated using taxMyPhage.
Building on the original database, INPHARED2 provides an expanded and improved reference resource for phage genomics; the updated resource and analysis are described in our INPHARED2 preprint. It provides an easy-to-use online search function alongside bulk data downloads. The online database was last updated on 03 October 2026
Explore INPHARED2 data visually
Create interactive summaries of genome metadata and download the resulting figures.
Search INPHARED
Search by accession, description, host or taxonomy. The filters below reflect the initial INPHARED2 display specification.
37387 matching reference genomes out of 37387. Search and filters are active; download will follow after the fields are finalised.
INPHARED2 search results
The results table contains the selected original taxonomy, CheckV, TaxMyPhage and PhageLeads fields. It can be scrolled horizontally for the full record.
| Accession ▼ | Description | Genome Length (bp) | molGC (%) | Host | Baltimore Group | Lowest Taxa | Genus | Sub-family | Family | Order | Class | Phylum | Kingdom | Realm | Isolation Host | CheckV quality | CheckV MIUVIG quality | CheckV completeness | CheckV completeness method | TaxMyPhage genus | TaxMyPhage species | TaxMyPhage message | PhageLeads lifestyle | PhageLeads problematic genes |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| PZ744395 | Alcaligenaceae phage Billys | 43830 | 41.955 | Alcaligenaceae | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Alcaligenaceae sp. | Medium-quality | Genome-fragment | 89.830 | AAI-based (high-confidence) | New_genus | New_species | No hits were found with the default settings | lytic | |
| PZ744394 | Stenotrophomonas phage Webb2508 | 40377 | 64.036 | Stenotrophomonas | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Stenotrophomonas rhizophila | Medium-quality | Genome-fragment | 65.790 | AAI-based (high-confidence) | Yuavirus | Yuavirus new_name | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | lytic | |
| PZ744393 | Stenotrophomonas phage Hallihayle | 14403 | 57.787 | Stenotrophomonas | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Stenotrophomonas rhizophila | Low-quality | Genome-fragment | 24.800 | AAI-based (high-confidence) | New_genus | New_species | Query is a new genus and species. You could try running again with if you larger distance | lytic | |
| PZ744392 | Stenotrophomonas phage Strumphy | 43686 | 62.823 | Stenotrophomonas | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Stenotrophomonas rhizophila | High-quality | High-quality | 98.260 | AAI-based (high-confidence) | Pradovirus | Pradovirus new_name | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | lytic | |
| PZ744391 | Achromobacter phage Arch13 | 38178 | 61.090 | Achromobacter | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Achromobacter veterisilvae AB1 | Complete | High-quality | 100.000 | DTR (high-confidence) | New_genus | New_species | No hits were found with the default settings | lytic | |
| PZ744390 | Stenotrophomonas phage Boudica | 44490 | 59.919 | Stenotrophomonas | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Stenotrophomonas humi | High-quality | High-quality | 99.340 | AAI-based (medium-confidence) | New_genus | New_species | No hits were found with the default settings | lytic | |
| PZ744389 | Variovorax phage Nipunaluna | 58371 | 58.306 | Variovorax | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Variovorax sp. | High-quality | High-quality | 100.000 | AAI-based (high-confidence) | Nipunavirus | Nipunavirus new_name | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | lytic | |
| PZ744388 | Rhodococcus phage Sledgie | 79335 | 59.593 | Rhodococcus | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Rhodococcus sp. | High-quality | High-quality | 92.870 | HMM-based (lower-bound) | New_genus | New_species | No hits were found with the default settings | temperate | integrase orf_120;integrase orf_123 |
| PZ744387 | Brevundimonas phage Ashyn | 20554 | 61.477 | Brevundimonas | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Brevundimonas sp. | Low-quality | Genome-fragment | 48.110 | AAI-based (high-confidence) | New_genus | New_species | No hits were found with the default settings | lytic | |
| PZ744386 | Stenotrophomonas phage Ancalagon | 318097 | 44.215 | Stenotrophomonas | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Stenotrophomonas humi | High-quality | High-quality | 90.190 | AAI-based (high-confidence) | New_genus | New_species | No hits were found with the default settings | lytic |