INPHARED2
INPHARED2
INPHARED2 is the new home of the INPHARED resource, providing a curated, regularly updated set of complete bacteriophage genomes with associated metadata and genome quality information, including CheckV assessments and taxonomy generated using taxMyPhage.
Building on the original database, INPHARED2 provides an expanded and improved reference resource for phage genomics; the updated resource and analysis are described in our INPHARED2 preprint. It provides an easy-to-use online search function alongside bulk data downloads.
Explore INPHARED2 data visually
Create interactive summaries of genome metadata and download the resulting figures.
Search INPHARED
Search by accession, description, host or taxonomy. The filters below reflect the initial INPHARED2 display specification.
36350 matching reference genomes out of 36350. Search and filters are active; download will follow after the fields are finalised.
INPHARED2 search results
The results table contains the selected original taxonomy, CheckV, TaxMyPhage and PhageLeads fields. It can be scrolled horizontally for the full record.
| Accession ▼ | Description | Genome Length (bp) | molGC (%) | Host | Baltimore Group | Lowest Taxa | Genus | Sub-family | Family | Order | Class | Phylum | Kingdom | Realm | Isolation Host | CheckV quality | CheckV MIUVIG quality | CheckV completeness | CheckV completeness method | TaxMyPhage genus | TaxMyPhage species | TaxMyPhage message | PhageLeads lifestyle | PhageLeads problematic genes |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| PZ490833 | Klebsiella phage KPS19-ZH-P1 | 45685 | 47.747 | Klebsiella | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Klebsiella pneumoniae KPS19 | High-quality | High-quality | 97.220 | AAI-based (high-confidence) | New_genus | New_species | Query is a new genus and species. You could try running again with if you larger distance | lytic | |
| PZ490547 | Staphylococcus phage PSA33 | 129403 | 30.780 | Staphylococcus | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Staphylococcus aureus | Complete | High-quality | 100.000 | DTR (high-confidence) | Kayvirus | Kayvirus new_name | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | lytic | |
| PZ490076 | Escherichia phage BUCT788EP1.2 | 40032 | 49.815 | Escherichia | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Escherichia coli E4002 | Complete | High-quality | 100.000 | DTR (high-confidence) | Kayfunavirus | Kayfunavirus new_name | The number of expected genera is different from the predicted number of genus clusters. It will require more manual curation | lytic | |
| PZ490075 | Escherichia phage BUCT788EP1.1 | 22500 | 50.582 | Escherichia | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Escherichia coli E4002 | Medium-quality | Genome-fragment | 56.370 | AAI-based (high-confidence) | New_genus | New_species | Query is a new genus and species. You could try running again with if you larger distance | lytic | |
| PZ486404 | Salmonella phage RBTM-01 | 42786 | 49.766 | Salmonella | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Salmonella enterica subsp. enterica serovar Typhimurium | High-quality | High-quality | 99.890 | AAI-based (high-confidence) | Jerseyvirus | Jerseyvirus TUMSE19 | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | lytic | |
| PZ486388 | Klebsiella phage phi1_150062 | 111827 | 44.725 | Klebsiella | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Klebsiella pneumoniae 135007 | High-quality | High-quality | 96.020 | AAI-based (high-confidence) | New_genus | New_species | No hits were found with the default settings | lytic | |
| PZ485852 | Enterobacter phage P-En-1 | 34507 | 51.271 | Enterobacter | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Enterobacter sp. | High-quality | High-quality | 97.820 | AAI-based (high-confidence) | New_genus | New_species | Query is a new genus and species. You could try running again with if you larger distance | temperate | integrase orf_27;integrase orf_41 |
| PZ483755 | Staphylococcus phage vB_SauS_MDR26 | 46103 | 33.336 | Staphylococcus | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Staphylococcus aureus MDR26 | High-quality | High-quality | 99.300 | AAI-based (high-confidence) | Triavirus | Triavirus SAP11 | The number of expected genera is different from the predicted number of genus clusters. It will require more manual curation | temperate | integrase orf_36;integrase orf_67 |
| PZ483754 | Staphylococcus phage vB_SauS_MDR16 | 40755 | 33.952 | Staphylococcus | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Staphylococcus aureus MDR16 | Complete | High-quality | 100.000 | DTR (high-confidence) | Biseptimavirus | Biseptimavirus new_name | The number of expected genera is different from the predicted number of genus clusters. It will require more manual curation | temperate | antirepressor orf_15;antirepressor orf_19;integrase orf_24;integrase orf_53 |
| PZ483753 | Staphylococcus phage vB_SauS_MDR13 | 42459 | 33.112 | Staphylococcus | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Staphylococcus aureus MDR13 | High-quality | High-quality | 99.840 | AAI-based (high-confidence) | Biseptimavirus | Biseptimavirus new_name | The number of expected genera is different from the predicted number of genus clusters. It will require more manual curation | temperate | antirepressor orf_7;integrase orf_16;integrase orf_47 |