INPHARED2
INPHARED2
INPHARED2 is the new home of the INPHARED resource, providing a curated, regularly updated set of complete bacteriophage genomes with associated metadata and genome quality information, including CheckV assessments and taxonomy generated using taxMyPhage.
Building on the original database, INPHARED2 provides an expanded and improved reference resource for phage genomics; the updated resource and analysis are described in our INPHARED2 preprint. It provides an easy-to-use online search function alongside bulk data downloads.
Explore INPHARED2 data visually
Create interactive summaries of genome metadata and download the resulting figures.
Search INPHARED
Search by accession, description, host or taxonomy. The filters below reflect the initial INPHARED2 display specification.
36350 matching reference genomes out of 36350. Search and filters are active; download will follow after the fields are finalised.
INPHARED2 search results
The results table contains the selected original taxonomy, CheckV, TaxMyPhage and PhageLeads fields. It can be scrolled horizontally for the full record.
| Accession ▼ | Description | Genome Length (bp) | molGC (%) | Host | Baltimore Group | Lowest Taxa | Genus | Sub-family | Family | Order | Class | Phylum | Kingdom | Realm | Isolation Host | CheckV quality | CheckV MIUVIG quality | CheckV completeness | CheckV completeness method | TaxMyPhage genus | TaxMyPhage species | TaxMyPhage message | PhageLeads lifestyle | PhageLeads problematic genes |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| PV029541 | Escherichia phage PBM-2 | 72758 | 43.154 | Escherichia | Group I | Gamaleyavirus | Gamaleyavirus | Enquatrovirinae | Schitoviridae | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Escherichia sp. | Complete | High-quality | 100.000 | DTR (high-confidence) | Gamaleyavirus | Gamaleyavirus Pbm2 | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | lytic | |
| PV026551 | Klebsiella phage Halo_KS_7 | 58716 | 44.414 | Klebsiella | Group I | Efbeekayvirus | Efbeekayvirus | Waldeevirinae | Schitoviridae | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Klebsiella pneumoniae | Medium-quality | Genome-fragment | 77.090 | AAI-based (high-confidence) | Efbeekayvirus | Efbeekayvirus new_name | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | lytic | |
| PV022100 | Acinetobacter phage AB_NC12 | 40199 | 39.494 | Acinetobacter | Group I | Friunavirus | Friunavirus | Beijerinckvirinae | Autoscriptoviridae | Autographivirales | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Acinetobacter baumannii XH386 | High-quality | High-quality | 97.050 | AAI-based (high-confidence) | Friunavirus | Friunavirus NC12 | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | lytic | |
| PV021103 | Salmonella phage vB_Sen_S3P | 43620 | 49.764 | Salmonella | Group I | Jerseyvirus | Jerseyvirus | Guernseyvirinae | Sarkviridae | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Salmonella sp. | High-quality | High-quality | 100.000 | AAI-based (high-confidence) | Jerseyvirus | Jerseyvirus S532 | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | lytic | |
| PV020493 | Staphylococcus phage RSM-J51Sa | 140604 | 29.405 | Staphylococcus | Group I | Baoshanvirus | Baoshanvirus | Twortvirinae | Herelleviridae | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Unspecified | High-quality | High-quality | 95.860 | AAI-based (high-confidence) | Baoshanvirus | Baoshanvirus new_name | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | lytic | |
| PV019367 | Enterobacter phage vB_ECC_CW742 | 173445 | 39.647 | Enterobacter | Group I | Karamvirus | Karamvirus | Tevenvirinae | Straboviridae | Pantevenvirales | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Enterobacter hormaechei ST 742 | High-quality | High-quality | 100.000 | AAI-based (high-confidence) | Karamvirus | Karamvirus CW742 | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | lytic | |
| PV019040 | phage LMM67718/37/56/62 | 96076 | 28.653 | Unspecified | Group I | Carjivirus | Carjivirus | Crudevirinae | Intestiviridae | Crassvirales | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | bacterium | High-quality | High-quality | 90.490 | AAI-based (high-confidence) | Carjivirus | Carjivirus communis | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | lytic | |
| PV019039 | phage LMM67717/36/55/61 | 95313 | 28.498 | Unspecified | Group I | Carjivirus | Carjivirus | Crudevirinae | Intestiviridae | Crassvirales | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | bacterium | Medium-quality | Genome-fragment | 89.690 | AAI-based (high-confidence) | Carjivirus | Carjivirus communis | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | lytic | |
| PV019038 | phage LMM67716/35/54/60 | 95348 | 29.176 | Unspecified | Group I | Carjivirus | Carjivirus | Crudevirinae | Intestiviridae | Crassvirales | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | bacterium | Medium-quality | Genome-fragment | 89.770 | AAI-based (high-confidence) | Carjivirus | Carjivirus communis | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | lytic | |
| PV019037 | phage LMM67715/34/53/59 | 95947 | 29.103 | Unspecified | Group I | Carjivirus | Carjivirus | Crudevirinae | Intestiviridae | Crassvirales | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | bacterium | High-quality | High-quality | 90.370 | AAI-based (high-confidence) | Carjivirus | Carjivirus communis | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | lytic |