INPHARED2
INPHARED2 is the new home of the INPHARED resource, providing a curated, regularly updated set of complete bacteriophage genomes with associated metadata and genome quality information, including CheckV assessments and taxonomy generated using taxMyPhage.
Building on the original database, INPHARED2 provides an expanded and improved reference resource for phage genomics; the updated resource and analysis are described in our INPHARED2 preprint. It provides an easy-to-use online search function alongside bulk data downloads.
Explore INPHARED2 data visually
Create interactive summaries of genome metadata and download the resulting figures.
Search INPHARED
Search by accession, description, host or taxonomy. The filters below reflect the initial INPHARED2 display specification.
36350 matching reference genomes out of 36350. Search and filters are active; download will follow after the fields are finalised.
INPHARED2 search results
The results table contains the selected original taxonomy, CheckV, TaxMyPhage and PhageLeads fields. It can be scrolled horizontally for the full record.
| Accession ▼ | Description | Genome Length (bp) | molGC (%) | Host | Baltimore Group | Lowest Taxa | Genus | Sub-family | Family | Order | Class | Phylum | Kingdom | Realm | Isolation Host | CheckV quality | CheckV MIUVIG quality | CheckV completeness | CheckV completeness method | TaxMyPhage genus | TaxMyPhage species | TaxMyPhage message | PhageLeads lifestyle | PhageLeads problematic genes |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| PV072761 | Burkholderia phage vB_PR5 | 44199 | 61.029 | Burkholderia | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Burkholderia sp. | Medium-quality | Genome-fragment | 87.330 | AAI-based (high-confidence) | New_genus | New_species | Query is a new genus and species. You could try running again with if you larger distance | temperate | integrase orf_29 |
| PV072760 | Burkholderia phage vB_PR2c | 36279 | 62.540 | Burkholderia | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Burkholderia sp. | High-quality | High-quality | 96.400 | AAI-based (high-confidence) | New_genus | New_species | No hits were found with the default settings | temperate | integrase orf_17 |
| PV072759 | Burkholderia phage vB_E433 | 36108 | 62.839 | Burkholderia | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Burkholderia sp. | High-quality | High-quality | 97.310 | AAI-based (high-confidence) | Bcepmuvirus | Bcepmuvirus new_name | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | temperate | integrase orf_34 |
| PV072758 | Burkholderia phage vB_E430 | 39055 | 63.027 | Burkholderia | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Burkholderia sp. | High-quality | High-quality | 100.000 | AAI-based (high-confidence) | Bcepmuvirus | Bcepmuvirus new_name | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | temperate | integrase orf_36 |
| PV072757 | Burkholderia phage vB_CB2b | 38797 | 62.680 | Burkholderia | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Burkholderia sp. | High-quality | High-quality | 100.000 | AAI-based (high-confidence) | Bcepmuvirus | Bcepmuvirus new_name | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | temperate | integrase orf_38 |
| PV072756 | Burkholderia phage vB_PL1 | 57352 | 63.895 | Burkholderia | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Burkholderia sp. | Medium-quality | Genome-fragment | 79.110 | HMM-based (lower-bound) | New_genus | New_species | Query is a new genus and species. You could try running again with if you larger distance | temperate | integrase orf_41;integrase orf_48 |
| PV072755 | Burkholderia phage vB_E169 | 44385 | 63.749 | Burkholderia | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Burkholderia sp. | High-quality | High-quality | 100.000 | AAI-based (high-confidence) | New_genus | New_species | No hits were found with the default settings | temperate | integrase orf_34 |
| PV072754 | Burkholderia phage vB_BA | 39178 | 64.651 | Burkholderia | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Burkholderia sp. | High-quality | High-quality | 100.000 | AAI-based (high-confidence) | Tigrvirus | Tigrvirus new_name | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | temperate | integrase orf_47 |
| PV072753 | Burkholderia phage vB_CC4 | 39178 | 64.651 | Burkholderia | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Burkholderia sp. | High-quality | High-quality | 100.000 | AAI-based (high-confidence) | Tigrvirus | Tigrvirus new_name | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | temperate | integrase orf_47 |
| PV072752 | Burkholderia phage vB_PL15 | 39178 | 64.651 | Burkholderia | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Burkholderia sp. | High-quality | High-quality | 100.000 | AAI-based (high-confidence) | Tigrvirus | Tigrvirus new_name | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | temperate | integrase orf_47 |