INPHARED2
INPHARED2
INPHARED2 is the new home of the INPHARED resource, providing a curated, regularly updated set of complete bacteriophage genomes with associated metadata and genome quality information, including CheckV assessments and taxonomy generated using taxMyPhage.
Building on the original database, INPHARED2 provides an expanded and improved reference resource for phage genomics; the updated resource and analysis are described in our INPHARED2 preprint. It provides an easy-to-use online search function alongside bulk data downloads.
Explore INPHARED2 data visually
Create interactive summaries of genome metadata and download the resulting figures.
Search INPHARED
Search by accession, description, host or taxonomy. The filters below reflect the initial INPHARED2 display specification.
36350 matching reference genomes out of 36350. Search and filters are active; download will follow after the fields are finalised.
INPHARED2 search results
The results table contains the selected original taxonomy, CheckV, TaxMyPhage and PhageLeads fields. It can be scrolled horizontally for the full record.
| Accession ▼ | Description | Genome Length (bp) | molGC (%) | Host | Baltimore Group | Lowest Taxa | Genus | Sub-family | Family | Order | Class | Phylum | Kingdom | Realm | Isolation Host | CheckV quality | CheckV MIUVIG quality | CheckV completeness | CheckV completeness method | TaxMyPhage genus | TaxMyPhage species | TaxMyPhage message | PhageLeads lifestyle | PhageLeads problematic genes |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| PV189481 | Klebsiella phage KpnBHU6 | 27465 | 53.137 | Klebsiella | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Klebsiella pneumoniae | Medium-quality | Genome-fragment | 62.570 | AAI-based (high-confidence) | New_genus | New_species | Query is a new genus and species. You could try running again with if you larger distance | lytic | |
| PV189480 | Klebsiella phage KpnBHU6 | 47421 | 52.945 | Klebsiella | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Klebsiella pneumoniae | High-quality | High-quality | 100.000 | AAI-based (high-confidence) | New_genus | New_species | Query is a new genus and species. You could try running again with if you larger distance | temperate | cro orf_57;integrase orf_71 |
| PV189407 | Escherichia phage vB_EcoP_phi419 | 60662 | 49.291 | Escherichia | Group I | Traversvirus | Traversvirus | Sepvirinae | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Escherichia coli K514 (EHEC) | High-quality | High-quality | 92.410 | AAI-based (high-confidence) | Traversvirus | Traversvirus tv86 | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | temperate | integrase orf_23;antirepressor orf_29;cro orf_52;cro orf_53;antirepressor orf_65;antirepressor orf_78 |
| PV189406 | Escherichia phage vB_EcoP_phi367 | 58966 | 49.795 | Escherichia | Group I | Oslovirus | Oslovirus | Sepvirinae | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Escherichia coli K514 (EHEC) | Medium-quality | Genome-fragment | 89.780 | AAI-based (high-confidence) | Traversvirus | Traversvirus new_name | The number of expected genera is different from the predicted number of genus clusters. It will require more manual curation | temperate | integrase orf_29;antirepressor orf_37;cro orf_56;antirepressor orf_57;antirepressor orf_78 |
| PV189405 | Escherichia phage vB_EcoP_phi349 | 62509 | 50.143 | Escherichia | Group I | Oslovirus | Oslovirus | Sepvirinae | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Escherichia coli K514 (EHEC) | High-quality | High-quality | 94.580 | AAI-based (high-confidence) | Oslovirus | Oslovirus PA2 | The number of expected genera is different from the predicted number of genus clusters. It will require more manual curation | temperate | integrase orf_25;antirepressor orf_31;antirepressor orf_38;antirepressor orf_58;cro orf_61;cro orf_62 |
| PV189404 | Escherichia phage vB_EcoP_phi346 | 63554 | 50.165 | Escherichia | Group I | Oslovirus | Oslovirus | Sepvirinae | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Escherichia coli K514 (EHEC) | High-quality | High-quality | 96.290 | AAI-based (high-confidence) | Oslovirus | Oslovirus PA2 | The number of expected genera is different from the predicted number of genus clusters. It will require more manual curation | temperate | integrase orf_25;antirepressor orf_31;antirepressor orf_36;antirepressor orf_58;cro orf_61;cro orf_62;antirepressor orf_79 |
| PV189403 | Escherichia phage vB_EcoP_phi315 | 59532 | 49.436 | Escherichia | Group I | Traversvirus | Traversvirus | Sepvirinae | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Escherichia coli K514 (EHEC) | High-quality | High-quality | 90.750 | AAI-based (high-confidence) | Traversvirus | Traversvirus new_name | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | temperate | integrase orf_26;antirepressor orf_35;cro orf_58;cro orf_59;antirepressor orf_67;antirepressor orf_79 |
| PV189402 | Escherichia phage vB_EcoP_phi345 | 62385 | 49.294 | Escherichia | Group I | Traversvirus | Traversvirus | Sepvirinae | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Escherichia coli K514 (EHEC) | High-quality | High-quality | 95.060 | AAI-based (high-confidence) | Traversvirus | Traversvirus P27 | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | temperate | integrase orf_23;antirepressor orf_30;cro orf_56;cro orf_57;antirepressor orf_68;antirepressor orf_82 |
| PV189401 | Escherichia phage vB_EcoS_phi330 | 55911 | 51.008 | Escherichia | Group I | Pankowvirus | Pankowvirus | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Escherichia coli K514 (EHEC) | High-quality | High-quality | 100.000 | AAI-based (high-confidence) | Pankowvirus | Pankowvirus new_name | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | temperate | antirepressor orf_21;integrase orf_32;cro orf_56;cro orf_57;antirepressor orf_67;antirepressor orf_68 |
| PV189400 | Escherichia phage vB_EcoP_phi296 | 57221 | 49.929 | Escherichia | Group I | Traversvirus | Traversvirus | Sepvirinae | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Escherichia coli K514 (EHEC) | Medium-quality | Genome-fragment | 87.150 | AAI-based (high-confidence) | Traversvirus | Traversvirus new_name | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | temperate | integrase orf_23;antirepressor orf_29;cro orf_51;antirepressor orf_52;antirepressor orf_60;antirepressor orf_72 |