Becky Mayer Centre for Phage Research
BMCPR PhageBank
INPHARED2

INPHARED2

INPHARED2 is the new home of the INPHARED resource, providing a curated, regularly updated set of complete bacteriophage genomes with associated metadata and genome quality information, including CheckV assessments and taxonomy generated using taxMyPhage.

Building on the original database, INPHARED2 provides an expanded and improved reference resource for phage genomics; the updated resource and analysis are described in our INPHARED2 preprint. It provides an easy-to-use online search function alongside bulk data downloads.

Search INPHARED

Search by accession, description, host or taxonomy. The filters below reflect the initial INPHARED2 display specification.

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36350 matching reference genomes out of 36350. Search and filters are active; download will follow after the fields are finalised.

INPHARED2 search results

The results table contains the selected original taxonomy, CheckV, TaxMyPhage and PhageLeads fields. It can be scrolled horizontally for the full record.

Accession ▼ Description Genome Length (bp) molGC (%) Host Baltimore Group Lowest Taxa Genus Sub-family Family Order Class Phylum Kingdom Realm Isolation Host CheckV quality CheckV MIUVIG quality CheckV completeness CheckV completeness method TaxMyPhage genus TaxMyPhage species TaxMyPhage message PhageLeads lifestyle PhageLeads problematic genes
PV402122Klebsiella phage KpCCP117727741.822KlebsiellaGroup I SlopekvirusSlopekvirusUnclassifiedStraboviridaePantevenviralesCaudoviricetesUroviricotaHeunggongviraeDuplodnaviria Klebsiella pneumoniaeHigh-qualityHigh-quality99.500AAI-based (high-confidence) SlopekvirusSlopekvirus kp15Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus levellytic
PV400811Citrobacter phage NM4.317435138.740CitrobacterGroup I MoonvirusMoonvirusTevenvirinaeStraboviridaePantevenviralesCaudoviricetesUroviricotaHeunggongviraeDuplodnaviria Citrobacter freundiiHigh-qualityHigh-quality100.000AAI-based (high-confidence) MoonvirusMoonvirus new_nameCurrent ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus levellytic
PV400810Pseudomonas phage vB_PaeM_GXNNA820969849.332PseudomonasGroup I UnclassifiedUnclassifiedUnclassifiedUnclassifiedUnclassifiedCaudoviricetesUroviricotaHeunggongviraeDuplodnaviria Pseudomonas aeruginosa PA_GP-1High-qualityHigh-quality99.280AAI-based (high-confidence) ElvirusElvirus new_nameCurrent ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus levellytic
PV400809Pseudomonas phage vB_PaeM_GXNNE220969849.332PseudomonasGroup I ElvirusElvirusUnclassifiedChimalliviridaeUnclassifiedCaudoviricetesUroviricotaHeunggongviraeDuplodnaviria Pseudomonas aeruginosa PA_GP-1High-qualityHigh-quality99.280AAI-based (high-confidence) ElvirusElvirus new_nameCurrent ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus levellytic
PV399855Vibrio phage Ph19S9E25108341.525VibrioUnclassified UnclassifiedUnclassifiedUnclassifiedUnclassifiedUnclassifiedUnclassifiedUnclassifiedUnclassifiedUnclassified Vibrio parahaemolyticus vp19S9E2Medium-qualityGenome-fragment58.440AAI-based (high-confidence) New_genusNew_speciesNo hits were found with the default settingslytic
PV394112Ochrobactrum phage ZX867611249.812OchrobactrumGroup I UnclassifiedUnclassifiedUnclassifiedUnclassifiedUnclassifiedCaudoviricetesUroviricotaHeunggongviraeDuplodnaviria Ochrobactrum sp.High-qualityHigh-quality100.000AAI-based (medium-confidence) New_genusNew_speciesNo hits were found with the default settingslytic
PV394073Salmonella phage PHZ19111145239.848SalmonellaGroup I EpseptimavirusEpseptimavirusMarkadamsvirinaeDemerecviridaeUnclassifiedCaudoviricetesUroviricotaHeunggongviraeDuplodnaviria Salmonella enterica subsp. enterica serovar Pullorum HZ191CompleteHigh-quality100.000DTR (high-confidence) EpseptimavirusEpseptimavirus new_nameThe number of expected genera is different from the predicted number of genus clusters. It will require more manual curationlytic
PV393741Pantoea phage Bubbas4043052.179PantoeaGroup I UnclassifiedUnclassifiedUnclassifiedUnclassifiedAutographiviralesCaudoviricetesUroviricotaHeunggongviraeDuplodnaviria Pantoea ananatis 97-1RCompleteHigh-quality100.000DTR (high-confidence) SnaubvirusSnaubvirus new_nameCurrent ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus levellytic
PV390659Escherichia phage vB_EcoM_P816716935.510EscherichiaGroup I TequatrovirusTequatrovirusTevenvirinaeStraboviridaePantevenviralesCaudoviricetesUroviricotaHeunggongviraeDuplodnaviria Escherichia coliHigh-qualityHigh-quality99.400AAI-based (high-confidence) TequatrovirusTequatrovirus BMB16Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus levellytic
PV389083Mammaliicoccus phage phi625513368730.201MammaliicoccusUnclassified UnclassifiedUnclassifiedUnclassifiedUnclassifiedUnclassifiedUnclassifiedUnclassifiedUnclassifiedUnclassified Mammaliicoccus sciuri IVB6255High-qualityHigh-quality100.000AAI-based (medium-confidence) New_genusNew_speciesNo hits were found with the default settingstemperateintegrase orf_55
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