INPHARED2

INPHARED2 is the new home of the INPHARED resource, providing a curated, regularly updated set of complete bacteriophage genomes with associated metadata and genome quality information, including CheckV assessments and taxonomy generated using taxMyPhage.

Building on the original database, INPHARED2 provides an expanded and improved reference resource for phage genomics; the updated resource and analysis are described in our INPHARED2 preprint. It provides an easy-to-use online search function alongside bulk data downloads.

Explore INPHARED2 data visually

Create interactive summaries of genome metadata and download the resulting figures.

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Search INPHARED

Search by accession, description, host or taxonomy. The filters below reflect the initial INPHARED2 display specification.

Host (NCBI)

Family (NCBI)

Genus (TaxMyPhage)

CheckV quality

PhageLeads lifestyle

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36350 matching reference genomes out of 36350. Search and filters are active; download will follow after the fields are finalised.

INPHARED2 search results

The results table contains the selected original taxonomy, CheckV, TaxMyPhage and PhageLeads fields. It can be scrolled horizontally for the full record.

Accession ▼	Description	Genome Length (bp)	molGC (%)	Host	Baltimore Group	Lowest Taxa	Genus	Sub-family	Family	Order	Class	Phylum	Kingdom	Realm	Isolation Host	CheckV quality	CheckV MIUVIG quality	CheckV completeness	CheckV completeness method	TaxMyPhage genus	TaxMyPhage species	TaxMyPhage message	PhageLeads lifestyle	PhageLeads problematic genes
PV433196	Pectobacterium phage ZXLW2	38628	47.898	Pectobacterium	Unclassified	Unclassified	Unclassified	Unclassified	Unclassified	Unclassified	Unclassified	Unclassified	Unclassified	Unclassified	Pectobacterium carotovorum (synonym: Erwinia carotovora)	High-quality	High-quality	96.610	AAI-based (high-confidence)	Unyawovirus	Unyawovirus new_name	Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level	lytic
PV433195	Pectobacterium phage JJY1	38628	47.895	Pectobacterium	Unclassified	Unclassified	Unclassified	Unclassified	Unclassified	Unclassified	Unclassified	Unclassified	Unclassified	Unclassified	Pectobacterium carotovorum (synonym: Erwinia carotovora)	High-quality	High-quality	96.610	AAI-based (high-confidence)	Unyawovirus	Unyawovirus new_name	Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level	lytic
PV426910	Staphylococcus phage vB_Sep_steph4	141991	27.992	Staphylococcus	Unclassified	Unclassified	Unclassified	Unclassified	Unclassified	Unclassified	Unclassified	Unclassified	Unclassified	Unclassified	Staphylococcus epidermidis ATCC 12228	High-quality	High-quality	100.000	AAI-based (high-confidence)	Sepunavirus	Sepunavirus new_name	Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level	temperate	antirepressor orf_98
PV426909	Staphylococcus phage vB_Sep_steph3	140342	27.990	Staphylococcus	Unclassified	Unclassified	Unclassified	Unclassified	Unclassified	Unclassified	Unclassified	Unclassified	Unclassified	Unclassified	Staphylococcus epidermidis ATCC 12228	High-quality	High-quality	99.360	AAI-based (high-confidence)	Sepunavirus	Sepunavirus new_name	Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level	temperate	antirepressor orf_89
PV426908	Staphylococcus phage vB_Sep_steph2	141302	27.883	Staphylococcus	Unclassified	Unclassified	Unclassified	Unclassified	Unclassified	Unclassified	Unclassified	Unclassified	Unclassified	Unclassified	Staphylococcus epidermidis ATCC 12228	High-quality	High-quality	100.000	AAI-based (high-confidence)	Sepunavirus	Sepunavirus new_name	Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level	temperate	antirepressor orf_108
PV426907	Staphylococcus phage vB_Sep_steph1	140850	27.891	Staphylococcus	Unclassified	Unclassified	Unclassified	Unclassified	Unclassified	Unclassified	Unclassified	Unclassified	Unclassified	Unclassified	Staphylococcus epidermidis ATCC 12228	High-quality	High-quality	99.740	AAI-based (high-confidence)	Sepunavirus	Sepunavirus new_name	Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level	temperate	antirepressor orf_107
PV426864	Staphylococcus phage CIFT_MFB_MRSA21	141318	29.913	Staphylococcus	Group I	Silviavirus	Silviavirus	Twortvirinae	Herelleviridae	Unclassified	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Staphylococcus aureus	High-quality	High-quality	100.000	AAI-based (high-confidence)	Silviavirus	Silviavirus new_name	Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level	lytic
PV426651	Pseudomonas phage vB_Pa-PAC9	61675	64.511	Pseudomonas	Group I	Yuavirus	Yuavirus	Rabinowitzvirinae	Mesyanzhinovviridae	Unclassified	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Pseudomonas aeruginosa PAO1	High-quality	High-quality	100.000	AAI-based (high-confidence)	Yuavirus	Yuavirus PAC6	Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level	lytic
PV425441	Mammaliicoccus phage phi6228	47862	32.458	Mammaliicoccus	Unclassified	Unclassified	Unclassified	Unclassified	Unclassified	Unclassified	Unclassified	Unclassified	Unclassified	Unclassified	Mammaliicoccus sciuri IVB6228	High-quality	High-quality	100.000	AAI-based (high-confidence)	New_genus	New_species	No hits were found with the default settings	temperate	integrase orf_2;cro orf_11;antirepressor orf_13;cro orf_42
PV425437	Klebsiella phage Olmo	176826	44.720	Klebsiella	Group I	Pseudotevenvirus	Pseudotevenvirus	Unclassified	Straboviridae	Pantevenvirales	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Klebsiella pneumoniae	High-quality	High-quality	99.290	AAI-based (high-confidence)	Pseudotevenvirus	Pseudotevenvirus new_name	Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level	lytic