INPHARED2
INPHARED2 is the new home of the INPHARED resource, providing a curated, regularly updated set of complete bacteriophage genomes with associated metadata and genome quality information, including CheckV assessments and taxonomy generated using taxMyPhage.
Building on the original database, INPHARED2 provides an expanded and improved reference resource for phage genomics; the updated resource and analysis are described in our INPHARED2 preprint. It provides an easy-to-use online search function alongside bulk data downloads.
Explore INPHARED2 data visually
Create interactive summaries of genome metadata and download the resulting figures.
Search INPHARED
Search by accession, description, host or taxonomy. The filters below reflect the initial INPHARED2 display specification.
36350 matching reference genomes out of 36350. Search and filters are active; download will follow after the fields are finalised.
INPHARED2 search results
The results table contains the selected original taxonomy, CheckV, TaxMyPhage and PhageLeads fields. It can be scrolled horizontally for the full record.
| Accession ▼ | Description | Genome Length (bp) | molGC (%) | Host | Baltimore Group | Lowest Taxa | Genus | Sub-family | Family | Order | Class | Phylum | Kingdom | Realm | Isolation Host | CheckV quality | CheckV MIUVIG quality | CheckV completeness | CheckV completeness method | TaxMyPhage genus | TaxMyPhage species | TaxMyPhage message | PhageLeads lifestyle | PhageLeads problematic genes |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| PV574404 | Pseudomonas phage SW_PA2862_7_24 | 92798 | 49.347 | Pseudomonas | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Pseudomonas aeruginosa | Complete | High-quality | 100.000 | DTR (high-confidence) | Pakpunavirus | Pakpunavirus new_name | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | temperate | cro orf_43 |
| PV574017 | Escherichia phage EcM-vB1 | 75341 | 42.151 | Escherichia | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Escherichia coli (multidrug-resistant) | High-quality | High-quality | 98.850 | AAI-based (high-confidence) | Kuravirus | Kuravirus new_name | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | lytic | |
| PV568318 | Proteus phage PLY284 | 58621 | 46.758 | Proteus | Group I | Lavrentievavirus | Lavrentievavirus | Unclassified | Casjensviridae | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Proteus mirabilis | High-quality | High-quality | 98.400 | AAI-based (high-confidence) | Lavrentievavirus | Lavrentievavirus PM87 | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | lytic | |
| PV567558 | Salmonella phage PK5 | 55947 | 56.655 | Salmonella | Group I | Chivirus | Chivirus | Unclassified | Casjensviridae | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Salmonella enterica | Medium-quality | Genome-fragment | 86.650 | AAI-based (high-confidence) | Chivirus | Chivirus new_name | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | temperate | integrase orf_25 |
| PV567538 | Pectobcaterium phage DAPP2 | 40361 | 48.963 | Pectobcaterium | Group I | Pektosvirus | Pektosvirus | Studiervirinae | Autotranscriptaviridae | Autographivirales | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Pectobacterium polaris SRB2 | High-quality | High-quality | 100.000 | AAI-based (high-confidence) | Pektosvirus | Pektosvirus new_name | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | lytic | |
| PV565308 | Azotobacter phage TayeBlu | 59885 | 50.345 | Azotobacter | Group I | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Azotobacter vinelandii OP | High-quality | High-quality | 100.000 | AAI-based (high-confidence) | New_genus | New_species | No hits were found with the default settings | lytic | |
| PV565045 | Pseudomonas phage Stamos | 40667 | 58.384 | Pseudomonas | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Pseudomonas putida | Complete | High-quality | 100.000 | DTR (high-confidence) | Troedvirus | Troedvirus new_name | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | lytic | |
| PV565044 | Pseudomonas phage Meara | 74705 | 53.680 | Pseudomonas | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Pseudomonas putida | High-quality | High-quality | 100.000 | AAI-based (high-confidence) | New_genus | New_species | No hits were found with the default settings | lytic | |
| PV565043 | Pseudomonas phage Holyagarpour | 75462 | 53.555 | Pseudomonas | Group I | Zurivirus | Zurivirus | Unclassified | Schitoviridae | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Pseudomonas putida | Complete | High-quality | 100.000 | DTR (high-confidence) | Zurivirus | Zurivirus Holyagarpour | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | lytic | |
| PV565042 | Pseudomonas phage Ebordelon | 74043 | 53.703 | Pseudomonas | Group I | Zurivirus | Zurivirus | Unclassified | Schitoviridae | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Pseudomonas putida | Complete | High-quality | 100.000 | DTR (high-confidence) | Zurivirus | Zurivirus Ebordelon | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | lytic |