INPHARED2
INPHARED2 is the new home of the INPHARED resource, providing a curated, regularly updated set of complete bacteriophage genomes with associated metadata and genome quality information, including CheckV assessments and taxonomy generated using taxMyPhage.
Building on the original database, INPHARED2 provides an expanded and improved reference resource for phage genomics; the updated resource and analysis are described in our INPHARED2 preprint. It provides an easy-to-use online search function alongside bulk data downloads.
Explore INPHARED2 data visually
Create interactive summaries of genome metadata and download the resulting figures.
Search INPHARED
Search by accession, description, host or taxonomy. The filters below reflect the initial INPHARED2 display specification.
36350 matching reference genomes out of 36350. Search and filters are active; download will follow after the fields are finalised.
INPHARED2 search results
The results table contains the selected original taxonomy, CheckV, TaxMyPhage and PhageLeads fields. It can be scrolled horizontally for the full record.
| Accession ▼ | Description | Genome Length (bp) | molGC (%) | Host | Baltimore Group | Lowest Taxa | Genus | Sub-family | Family | Order | Class | Phylum | Kingdom | Realm | Isolation Host | CheckV quality | CheckV MIUVIG quality | CheckV completeness | CheckV completeness method | TaxMyPhage genus | TaxMyPhage species | TaxMyPhage message | PhageLeads lifestyle | PhageLeads problematic genes |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| PV610739 | Escherichia phage SP1 | 44529 | 54.448 | Escherichia | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Escherichia coli | High-quality | High-quality | 99.540 | AAI-based (high-confidence) | Dhillonvirus | Dhillonvirus new_name | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | lytic | |
| PV610699 | Pseudomonas phage PaFZ4 | 43335 | 62.310 | Pseudomonas | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Pseudomonas aeruginosa | Complete | High-quality | 100.000 | DTR (high-confidence) | Phikmvvirus | Phikmvvirus new_name | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | lytic | |
| PV610698 | Klebsiella phage MT09 | 41205 | 52.171 | Klebsiella | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Klebsiella pneumoniae | Complete | High-quality | 100.000 | DTR (high-confidence) | Przondovirus | Przondovirus new_name | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | lytic | |
| PV610472 | Citrobacter phage YSYH | 40169 | 50.253 | Citrobacter | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Citrobacter freundii | High-quality | High-quality | 100.000 | AAI-based (high-confidence) | Apdecimavirus | Apdecimavirus new_name | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | lytic | |
| PV599391 | Leuconostoc phage phiLM0121_01 | 29455 | 36.204 | Leuconostoc | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Leuconostoc mesenteroides WIKIM 0121 | High-quality | High-quality | 100.000 | AAI-based (high-confidence) | Unaquatrovirus | Unaquatrovirus new_name | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | lytic | |
| PV598014 | Bacteroides phage phiHBP1 | 6319 | 38.962 | Bacteroides | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Bacteroides fragilis | High-quality | High-quality | 99.990 | AAI-based (high-confidence) | New_genus | New_species | No hits were found with the default settings | unknown | |
| PV596791 | Yersinia phage vB_Yep_15 | 39261 | 48.529 | Yersinia | Group I | Teseptimavirus | Teseptimavirus | Studiervirinae | Autotranscriptaviridae | Autographivirales | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Yersinia enterocolitica | Complete | High-quality | 100.000 | DTR (high-confidence) | Teseptimavirus | Teseptimavirus new_name | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | lytic | |
| PV596790 | Yersinia phage vB_Yep_9 | 39523 | 48.425 | Yersinia | Group I | Teseptimavirus | Teseptimavirus | Studiervirinae | Autotranscriptaviridae | Autographivirales | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Yersinia enterocolitica | Complete | High-quality | 100.000 | DTR (high-confidence) | Teseptimavirus | Teseptimavirus new_name | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | lytic | |
| PV596763 | Pseudomonas phage E21 | 58554 | 46.926 | Pseudomonas | Group I | Lavrentievavirus | Lavrentievavirus | Unclassified | Casjensviridae | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Pseudomonas aeruginosa | High-quality | High-quality | 98.280 | AAI-based (high-confidence) | Lavrentievavirus | Lavrentievavirus pPM01 | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | lytic | |
| PV593738 | Enterobacter phage vB_ECC_YI837 | 178352 | 44.857 | Enterobacter | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Enterobacter cloacae ST 837 | High-quality | High-quality | 100.000 | AAI-based (high-confidence) | Pseudotevenvirus | Pseudotevenvirus leb | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | lytic |