INPHARED2

INPHARED2 is the new home of the INPHARED resource, providing a curated, regularly updated set of complete bacteriophage genomes with associated metadata and genome quality information, including CheckV assessments and taxonomy generated using taxMyPhage.

Building on the original database, INPHARED2 provides an expanded and improved reference resource for phage genomics; the updated resource and analysis are described in our INPHARED2 preprint. It provides an easy-to-use online search function alongside bulk data downloads.

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Create interactive summaries of genome metadata and download the resulting figures.

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Search INPHARED

Search by accession, description, host or taxonomy. The filters below reflect the initial INPHARED2 display specification.

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36350 matching reference genomes out of 36350. Search and filters are active; download will follow after the fields are finalised.

INPHARED2 search results

The results table contains the selected original taxonomy, CheckV, TaxMyPhage and PhageLeads fields. It can be scrolled horizontally for the full record.

Accession ▼	Description	Genome Length (bp)	molGC (%)	Host	Baltimore Group	Lowest Taxa	Genus	Sub-family	Family	Order	Class	Phylum	Kingdom	Realm	Isolation Host	CheckV quality	CheckV MIUVIG quality	CheckV completeness	CheckV completeness method	TaxMyPhage genus	TaxMyPhage species	TaxMyPhage message	PhageLeads lifestyle
PV625063	Vibrio phage phiVP505_23LXQ	82768	46.733	Vibrio	Unclassified	Unclassified	Unclassified	Unclassified	Unclassified	Unclassified	Unclassified	Unclassified	Unclassified	Unclassified	Vibrio parahaemolyticus	High-quality	High-quality	100.000	AAI-based (high-confidence)	New_genus	New_species	No hits were found with the default settings	lytic
PV625053	Klebsiella phage vB_Kpn_004_Koku	44317	50.297	Klebsiella	Group I	Ulipvirus	Ulipvirus	Molineuxvirinae	Autosignataviridae	Autographivirales	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Klebsiella pneumoniae subsp. pneumoniae	High-quality	High-quality	99.380	AAI-based (high-confidence)	Ulipvirus	Ulipvirus new_name	Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level	lytic
PV625052	Klebsiella phage vB_Kpn_003_Koku	45245	51.745	Klebsiella	Group I	Gansuvirus	Gansuvirus	Molineuxvirinae	Autosignataviridae	Autographivirales	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Klebsiella pneumoniae subsp. pneumoniae	High-quality	High-quality	100.000	AAI-based (high-confidence)	Gansuvirus	Gansuvirus new_name	Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level	lytic
PV625051	Klebsiella phage vB_Kpn_002_Koku	37994	51.003	Klebsiella	Group I	Teetrevirus	Teetrevirus	Studiervirinae	Autotranscriptaviridae	Autographivirales	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Klebsiella pneumoniae subsp. pneumoniae	High-quality	High-quality	95.170	AAI-based (high-confidence)	Teetrevirus	Teetrevirus new_name	Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level	lytic
PV620261	Pseudomonas phage phTUNSm	40252	56.479	Pseudomonas	Group I	Warsawvirus	Warsawvirus	Studiervirinae	Autotranscriptaviridae	Autographivirales	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Pseudomonas asplenii UPB0736 (synonym: Pseudomonas fuscovaginae)	High-quality	High-quality	96.740	AAI-based (high-confidence)	Warsawvirus	Warsawvirus new_name	Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level	lytic
PV620260	Pseudomonas phage phTUNSv	40283	56.428	Pseudomonas	Group I	Warsawvirus	Warsawvirus	Studiervirinae	Autotranscriptaviridae	Autographivirales	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Pseudomonas asplenii UPB0736 (synonym: Pseudomonas fuscovaginae)	High-quality	High-quality	96.820	AAI-based (high-confidence)	Warsawvirus	Warsawvirus new_name	Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level	lytic
PV617771	Salmonella phage STL4	113136	39.770	Salmonella	Unclassified	Unclassified	Unclassified	Unclassified	Unclassified	Unclassified	Unclassified	Unclassified	Unclassified	Unclassified	Salmonella enterica subsp. enterica serovar Enteritidis	High-quality	High-quality	100.000	AAI-based (high-confidence)	Epseptimavirus	Epseptimavirus new_name	The number of expected genera is different from the predicted number of genus clusters. It will require more manual curation	lytic
PV615398	Salmonella phage PK8	105166	38.723	Salmonella	Group I	Markadamsvirinae	Unclassified	Markadamsvirinae	Demerecviridae	Unclassified	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Salmonella sp.	Complete	High-quality	100.000	DTR (high-confidence)	Tequintavirus	Tequintavirus new_name	The number of expected genera is different from the predicted number of genus clusters. It will require more manual curation	lytic
PV615265	Pseudomonas phage vB_Pae_1KM	44059	52.550	Pseudomonas	Group I	Bruynoghevirus	Bruynoghevirus	Unclassified	Unclassified	Unclassified	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Pseudomonas aeruginosa	High-quality	High-quality	97.140	AAI-based (high-confidence)	Bruynoghevirus	Bruynoghevirus new_name	Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level	lytic
PV615264	Klebsiella phage vB_Kpn_1KM2	49496	50.333	Klebsiella	Group I	Webervirus	Webervirus	Unclassified	Drexlerviridae	Unclassified	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Klebsiella pneumoniae	High-quality	High-quality	99.910	AAI-based (high-confidence)	Webervirus	Webervirus new_name	Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level	lytic