INPHARED2
INPHARED2 is the new home of the INPHARED resource, providing a curated, regularly updated set of complete bacteriophage genomes with associated metadata and genome quality information, including CheckV assessments and taxonomy generated using taxMyPhage.
Building on the original database, INPHARED2 provides an expanded and improved reference resource for phage genomics; the updated resource and analysis are described in our INPHARED2 preprint. It provides an easy-to-use online search function alongside bulk data downloads. The online database was last updated on 03 October 2026
Explore INPHARED2 data visually
Create interactive summaries of genome metadata and download the resulting figures.
Search INPHARED
Search by accession, description, host or taxonomy. The filters below reflect the initial INPHARED2 display specification.
37387 matching reference genomes out of 37387. Search and filters are active; download will follow after the fields are finalised.
INPHARED2 search results
The results table contains the selected original taxonomy, CheckV, TaxMyPhage and PhageLeads fields. It can be scrolled horizontally for the full record.
| Accession ▼ | Description | Genome Length (bp) | molGC (%) | Host | Baltimore Group | Lowest Taxa | Genus | Sub-family | Family | Order | Class | Phylum | Kingdom | Realm | Isolation Host | CheckV quality | CheckV MIUVIG quality | CheckV completeness | CheckV completeness method | TaxMyPhage genus | TaxMyPhage species | TaxMyPhage message | PhageLeads lifestyle | PhageLeads problematic genes |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| PX400594 | Klebsiella phage KpnB30 | 21862 | 43.807 | Klebsiella | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Klebsiella pneumoniae | Low-quality | Genome-fragment | 8.120 | AAI-based (high-confidence) | New_genus | New_species | Query is a new genus and species. You could try running again with if you larger distance | lytic | |
| PX400593 | Klebsiella phage KpnB27 | 177389 | 41.746 | Klebsiella | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Klebsiella pneumoniae | High-quality | High-quality | 99.560 | AAI-based (high-confidence) | Slopekvirus | Slopekvirus new_name | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | lytic | |
| PX399211 | Streptococcus phage 118 | 154261 | 37.120 | Streptococcus | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Streptococcus sp. AE-126 (ATCC 19951) | High-quality | High-quality | 100.000 | AAI-based (high-confidence) | Schiekvirus | Schiekvirus sv113 | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | temperate | cro orf_30;antirepressor orf_249 |
| PX395730 | Pseudomonas phage Shea | 43333 | 45.340 | Pseudomonas | Group I | Jamesmcgillvirus | Jamesmcgillvirus | Unclassified | Fredfastierviridae | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Pseudomonas aeruginosa MPA01 | Complete | High-quality | 100.000 | DTR (high-confidence) | Jamesmcgillvirus | Jamesmcgillvirus PaMx41 | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | lytic | |
| PX393110 | Escherichia phage Inksom_phi50-4 | 112912 | 45.680 | Escherichia | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Escherichia coli | High-quality | High-quality | 96.950 | AAI-based (high-confidence) | New_genus | New_species | No hits were found with the default settings | lytic | |
| PX393109 | Escherichia phage Inksom_phi25-4 | 113488 | 45.496 | Escherichia | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Escherichia coli | High-quality | High-quality | 97.450 | AAI-based (high-confidence) | New_genus | New_species | No hits were found with the default settings | lytic | |
| PX393108 | Escherichia phage Inksom_phi25-6 | 167245 | 35.586 | Escherichia | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Escherichia coli | High-quality | High-quality | 99.480 | AAI-based (high-confidence) | Tequatrovirus | Tequatrovirus new_name | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | lytic | |
| PX393085 | Vibrio phage vB_VpaS_R32L | 75740 | 48.908 | Vibrio | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Vibrio parahaemolyticus vp-HL-202005 | High-quality | High-quality | 98.860 | AAI-based (high-confidence) | Mardecavirus | Mardecavirus new_name | The number of expected genera is different from the predicted number of genus clusters. It will require more manual curation | lytic | |
| PX392307 | Aeromonas phage CT68P2 | 52686 | 52.325 | Aeromonas | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Aeromonas dhakensis A4.4 | High-quality | High-quality | 100.000 | AAI-based (high-confidence) | lytic | ||||
| PX390146 | Yersinia phage YN2024 | 37835 | 47.427 | Yersinia | Group I | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Yersinia pestis | High-quality | High-quality | 94.740 | AAI-based (high-confidence) | lytic |