INPHARED2

INPHARED2 is the new home of the INPHARED resource, providing a curated, regularly updated set of complete bacteriophage genomes with associated metadata and genome quality information, including CheckV assessments and taxonomy generated using taxMyPhage.

Building on the original database, INPHARED2 provides an expanded and improved reference resource for phage genomics; the updated resource and analysis are described in our INPHARED2 preprint. It provides an easy-to-use online search function alongside bulk data downloads.

Explore INPHARED2 data visually

Create interactive summaries of genome metadata and download the resulting figures.

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Search INPHARED

Search by accession, description, host or taxonomy. The filters below reflect the initial INPHARED2 display specification.

Host (NCBI)

Family (NCBI)

Genus (TaxMyPhage)

CheckV quality

PhageLeads lifestyle

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36350 matching reference genomes out of 36350. Search and filters are active; download will follow after the fields are finalised.

INPHARED2 search results

The results table contains the selected original taxonomy, CheckV, TaxMyPhage and PhageLeads fields. It can be scrolled horizontally for the full record.

Accession ▼	Description	Genome Length (bp)	molGC (%)	Host	Baltimore Group	Lowest Taxa	Genus	Sub-family	Family	Order	Class	Phylum	Kingdom	Realm	Isolation Host	CheckV quality	CheckV MIUVIG quality	CheckV completeness	CheckV completeness method	TaxMyPhage genus	TaxMyPhage species	TaxMyPhage message	PhageLeads lifestyle
PV809612	Salmonella phage NCVTCBPA218	112535	40.671	Salmonella	Unclassified	Unclassified	Unclassified	Unclassified	Unclassified	Unclassified	Unclassified	Unclassified	Unclassified	Unclassified	Salmonella enterica subsp. enterica serovar Typhimurium	High-quality	High-quality	99.500	AAI-based (high-confidence)	Epseptimavirus	Epseptimavirus new_name	The number of expected genera is different from the predicted number of genus clusters. It will require more manual curation	lytic
PV808485	Escherichia phage vB_EcoM_ShWW/46	150152	39.030	Escherichia	Unclassified	Unclassified	Unclassified	Unclassified	Unclassified	Unclassified	Unclassified	Unclassified	Unclassified	Unclassified	Escherichia coli	High-quality	High-quality	99.060	AAI-based (high-confidence)	Phapecoctavirus	Phapecoctavirus schickermooser	Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level	lytic
PV808484	Escherichia phage vB_EcoM_PL/4	146666	37.473	Escherichia	Unclassified	Unclassified	Unclassified	Unclassified	Unclassified	Unclassified	Unclassified	Unclassified	Unclassified	Unclassified	Escherichia coli	High-quality	High-quality	97.030	AAI-based (high-confidence)	Justusliebigvirus	Justusliebigvirus alia	Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level	lytic
PV808483	Escherichia phage vB_EcoS_ABO/4	57756	43.542	Escherichia	Unclassified	Unclassified	Unclassified	Unclassified	Unclassified	Unclassified	Unclassified	Unclassified	Unclassified	Unclassified	Escherichia coli	High-quality	High-quality	100.000	AAI-based (high-confidence)	Sashavirus	Sashavirus new_name	The number of expected genera is different from the predicted number of genus clusters. It will require more manual curation	lytic
PV806361	Cutibacterium phage vB_CacS_YGG	29424	54.065	Cutibacterium	Unclassified	Unclassified	Unclassified	Unclassified	Unclassified	Unclassified	Unclassified	Unclassified	Unclassified	Unclassified	Cutibacterium acnes ATCC 6919	High-quality	High-quality	99.880	AAI-based (high-confidence)	Pahexavirus	Pahexavirus new_name	Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level	lytic
PV806360	Cutibacterium phage vB_CacS_YGXY	29032	53.920	Cutibacterium	Unclassified	Unclassified	Unclassified	Unclassified	Unclassified	Unclassified	Unclassified	Unclassified	Unclassified	Unclassified	Cutibacterium acnes ATCC 6919	High-quality	High-quality	98.550	AAI-based (high-confidence)	Pahexavirus	Pahexavirus new_name	Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level	lytic
PV806359	Cutibacterium phage vB_CacS_YGP2	29467	53.752	Cutibacterium	Unclassified	Unclassified	Unclassified	Unclassified	Unclassified	Unclassified	Unclassified	Unclassified	Unclassified	Unclassified	Cutibacterium acnes ATCC 6919	High-quality	High-quality	100.000	AAI-based (high-confidence)	Pahexavirus	Pahexavirus new_name	Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level	lytic
PV806358	Cutibacterium phage vB_CacS_YGP1	29655	54.092	Cutibacterium	Unclassified	Unclassified	Unclassified	Unclassified	Unclassified	Unclassified	Unclassified	Unclassified	Unclassified	Unclassified	Cutibacterium acnes ATCC 6919	High-quality	High-quality	100.000	AAI-based (high-confidence)	Pahexavirus	Pahexavirus new_name	Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level	lytic
PV806357	Cutibacterium phage vB_CacS_YG2	29449	53.751	Cutibacterium	Unclassified	Unclassified	Unclassified	Unclassified	Unclassified	Unclassified	Unclassified	Unclassified	Unclassified	Unclassified	Cutibacterium acnes ATCC 6919	High-quality	High-quality	99.960	AAI-based (high-confidence)	Pahexavirus	Pahexavirus new_name	Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level	lytic
PV806356	Cutibacterium phage vB_CacS_YG1	29446	53.759	Cutibacterium	Unclassified	Unclassified	Unclassified	Unclassified	Unclassified	Unclassified	Unclassified	Unclassified	Unclassified	Unclassified	Cutibacterium acnes ATCC 6919	High-quality	High-quality	99.950	AAI-based (high-confidence)	Pahexavirus	Pahexavirus new_name	Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level	lytic