Becky Mayer Centre for Phage Research
BMCPR PhageBank
INPHARED2

INPHARED2

INPHARED2 is the new home of the INPHARED resource, providing a curated, regularly updated set of complete bacteriophage genomes with associated metadata and genome quality information, including CheckV assessments and taxonomy generated using taxMyPhage.

Building on the original database, INPHARED2 provides an expanded and improved reference resource for phage genomics; the updated resource and analysis are described in our INPHARED2 preprint. It provides an easy-to-use online search function alongside bulk data downloads.

Search INPHARED

Search by accession, description, host or taxonomy. The filters below reflect the initial INPHARED2 display specification.

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36350 matching reference genomes out of 36350. Search and filters are active; download will follow after the fields are finalised.

INPHARED2 search results

The results table contains the selected original taxonomy, CheckV, TaxMyPhage and PhageLeads fields. It can be scrolled horizontally for the full record.

Accession ▼ Description Genome Length (bp) molGC (%) Host Baltimore Group Lowest Taxa Genus Sub-family Family Order Class Phylum Kingdom Realm Isolation Host CheckV quality CheckV MIUVIG quality CheckV completeness CheckV completeness method TaxMyPhage genus TaxMyPhage species TaxMyPhage message PhageLeads lifestyle PhageLeads problematic genes
PV872557Acinetobacter phage AbaP_ARGUS43577940.504AcinetobacterUnclassified UnclassifiedUnclassifiedUnclassifiedUnclassifiedUnclassifiedUnclassifiedUnclassifiedUnclassifiedUnclassified Acinetobacter sp.High-qualityHigh-quality94.250AAI-based (high-confidence) New_genusNew_speciesQuery is a new genus and species. You could try running again with if you larger distancetemperateintegrase orf_29
PV872383Synechococcus phage S-RIP4b4440644.994SynechococcusUnclassified UnclassifiedUnclassifiedUnclassifiedUnclassifiedUnclassifiedUnclassifiedUnclassifiedUnclassifiedUnclassified Synechococcus sp. WH7803High-qualityHigh-quality98.700AAI-based (high-confidence) New_genusNew_speciesQuery is a new genus and species. You could try running again with if you larger distancelytic
PV872382Synechococcus phage S-RIP4a4419444.698SynechococcusUnclassified UnclassifiedUnclassifiedUnclassifiedUnclassifiedUnclassifiedUnclassifiedUnclassifiedUnclassifiedUnclassified Synechococcus sp. WH7803High-qualityHigh-quality98.900AAI-based (high-confidence) New_genusNew_speciesQuery is a new genus and species. You could try running again with if you larger distancelytic
PV871786Stenotrophomonas phage CP-p-PMA-230496605956.017StenotrophomonasGroup I BeaumontvirinaeUnclassifiedBeaumontvirinaeUnclassifiedUnclassifiedCaudoviricetesUroviricotaHeunggongviraeDuplodnaviria Stenotrophomonas maltophiliaCompleteHigh-quality100.000DTR (high-confidence) BixiavirusBixiavirus new_nameCurrent ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus levellytic
PV871785Stenotrophomonas phage CP-p-PMA-230154360959.667StenotrophomonasGroup I GujervirinaeUnclassifiedGujervirinaeAutonotataviridaeAutographiviralesCaudoviricetesUroviricotaHeunggongviraeDuplodnaviria Stenotrophomonas maltophiliaCompleteHigh-quality100.000DTR (high-confidence) SmasvirusSmasvirus BUCT700Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus levellytic
PV871784Klebsiella phage CP-p-KP-211294079752.737KlebsiellaGroup I StudiervirinaeUnclassifiedStudiervirinaeAutotranscriptaviridaeAutographiviralesCaudoviricetesUroviricotaHeunggongviraeDuplodnaviria Klebsiella pneumoniaeCompleteHigh-quality100.000DTR (high-confidence) PrzondovirusPrzondovirus NLZS2Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus levellytic
PV871783Escherichia phage CP-p-EC-230627831142.086EscherichiaGroup I UnclassifiedUnclassifiedUnclassifiedUnclassifiedUnclassifiedCaudoviricetesUroviricotaHeunggongviraeDuplodnaviria Escherichia coliHigh-qualityHigh-quality100.000AAI-based (high-confidence) KuravirusKuravirus new_nameCurrent ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus levellytic
PV871782Escherichia phage CP-p-EC-230523969249.859EscherichiaGroup I StudiervirinaeUnclassifiedStudiervirinaeAutotranscriptaviridaeAutographiviralesCaudoviricetesUroviricotaHeunggongviraeDuplodnaviria Escherichia coliCompleteHigh-quality100.000DTR (high-confidence) KayfunavirusKayfunavirus new_nameThe number of expected genera is different from the predicted number of genus clusters. It will require more manual curationlytic
PV871781Escherichia phage CP-p-EC-230454013249.918EscherichiaGroup I StudiervirinaeUnclassifiedStudiervirinaeAutotranscriptaviridaeAutographiviralesCaudoviricetesUroviricotaHeunggongviraeDuplodnaviria Escherichia coliCompleteHigh-quality100.000DTR (high-confidence) KayfunavirusKayfunavirus new_nameThe number of expected genera is different from the predicted number of genus clusters. It will require more manual curationlytic
PV871780Pseudomonas phage CP-p-PA-210244292562.157PseudomonasGroup I KrylovirinaeUnclassifiedKrylovirinaeAutoscriptoviridaeAutographiviralesCaudoviricetesUroviricotaHeunggongviraeDuplodnaviria Pseudomonas aeruginosaHigh-qualityHigh-quality99.660AAI-based (high-confidence) PhikmvvirusPhikmvvirus new_nameCurrent ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus levellytic
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