Becky Mayer Centre for Phage Research
BMCPR PhageBank
INPHARED2

INPHARED2

INPHARED2 is the new home of the INPHARED resource, providing a curated, regularly updated set of complete bacteriophage genomes with associated metadata and genome quality information, including CheckV assessments and taxonomy generated using taxMyPhage.

Building on the original database, INPHARED2 provides an expanded and improved reference resource for phage genomics; the updated resource and analysis are described in our INPHARED2 preprint. It provides an easy-to-use online search function alongside bulk data downloads. The online database was last updated on 03 October 2026

Search INPHARED

Search by accession, description, host or taxonomy. The filters below reflect the initial INPHARED2 display specification.

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37387 matching reference genomes out of 37387. Search and filters are active; download will follow after the fields are finalised.

INPHARED2 search results

The results table contains the selected original taxonomy, CheckV, TaxMyPhage and PhageLeads fields. It can be scrolled horizontally for the full record.

Accession ▼ Description Genome Length (bp) molGC (%) Host Baltimore Group Lowest Taxa Genus Sub-family Family Order Class Phylum Kingdom Realm Isolation Host CheckV quality CheckV MIUVIG quality CheckV completeness CheckV completeness method TaxMyPhage genus TaxMyPhage species TaxMyPhage message PhageLeads lifestyle PhageLeads problematic genes
PX571963Wolbachia phage Tunisp_d3061835.793WolbachiaUnclassified UnclassifiedUnclassifiedUnclassifiedUnclassifiedUnclassifiedUnclassifiedUnclassifiedUnclassifiedUnclassified Wolbachia pipientisMedium-qualityGenome-fragment54.650HMM-based (lower-bound) New_genusNew_speciesNo hits were found with the default settingstemperateintegrase orf_7;integrase orf_20
PX571962Wolbachia phage Tunisp_c5236834.729WolbachiaUnclassified UnclassifiedUnclassifiedUnclassifiedUnclassifiedUnclassifiedUnclassifiedUnclassifiedUnclassifiedUnclassified Wolbachia pipientisHigh-qualityHigh-quality91.190HMM-based (lower-bound) New_genusNew_speciesNo hits were found with the default settingstemperateintegrase orf_34
PX571961Wolbachia phage Tunisp_b3662434.770WolbachiaUnclassified UnclassifiedUnclassifiedUnclassifiedUnclassifiedUnclassifiedUnclassifiedUnclassifiedUnclassifiedUnclassified Wolbachia pipientisMedium-qualityGenome-fragment62.350AAI-based (medium-confidence) New_genusNew_speciesNo hits were found with the default settingstemperateintegrase orf_23
PX571960Wolbachia phage Tunisp_a7971134.665WolbachiaUnclassified UnclassifiedUnclassifiedUnclassifiedUnclassifiedUnclassifiedUnclassifiedUnclassifiedUnclassifiedUnclassified Wolbachia pipientisHigh-qualityHigh-quality93.310HMM-based (lower-bound) New_genusNew_speciesNo hits were found with the default settingstemperateintegrase orf_32
PX571108Salmonella phage SF018811039.014SalmonellaGroup I FelixounavirusFelixounavirusOunavirinaeAndersonviridaeUnclassifiedCaudoviricetesUroviricotaHeunggongviraeDuplodnaviria Salmonella enterica subsp. entericaHigh-qualityHigh-quality100.000AAI-based (high-confidence) FelixounavirusFelixounavirus new_nameCurrent ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus levellytic
PX570736Staphylococcus phage StaphC_1274148633.922StaphylococcusUnclassified UnclassifiedUnclassifiedUnclassifiedUnclassifiedUnclassifiedUnclassifiedUnclassifiedUnclassifiedUnclassified Staphylococcus caprae CEMTC 1849High-qualityHigh-quality100.000AAI-based (high-confidence) New_genusNew_speciesQuery is a new genus and species. You could try running again with if you larger distancetemperateantirepressor orf_31;integrase orf_37
PX570625Staphylococcus phage AZOS14184629.760StaphylococcusUnclassified UnclassifiedUnclassifiedUnclassifiedUnclassifiedUnclassifiedUnclassifiedUnclassifiedUnclassifiedUnclassified Staphylococcus aureusCompleteHigh-quality100.000DTR (high-confidence) BaoshanvirusBaoshanvirus new_nameCurrent ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus levellytic
PX564515Shigella phage fHBSA87768542.177ShigellaUnclassified UnclassifiedUnclassifiedUnclassifiedUnclassifiedUnclassifiedUnclassifiedUnclassifiedUnclassifiedUnclassified Shigella flexneriHigh-qualityHigh-quality100.000AAI-based (high-confidence) KuravirusKuravirus new_nameCurrent ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus levellytic
PX564512Shigella phage fMTSA116988239.541ShigellaUnclassified UnclassifiedUnclassifiedUnclassifiedUnclassifiedUnclassifiedUnclassifiedUnclassifiedUnclassifiedUnclassified Shigella flexneriCompleteHigh-quality100.000DTR (high-confidence) DhakavirusDhakavirus new_nameCurrent ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus leveltemperateantirepressor orf_210
PX563682Yersinia phage JC533941542.144YersiniaUnclassified UnclassifiedUnclassifiedUnclassifiedUnclassifiedUnclassifiedUnclassifiedUnclassifiedUnclassifiedUnclassified Yersinia pestis EV76-CNHigh-qualityHigh-quality98.920AAI-based (high-confidence) SolymavirusSolymavirus new_nameCurrent ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus levellytic
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