Becky Mayer Centre for Phage Research
BMCPR PhageBank
INPHARED2

INPHARED2

INPHARED2 is the new home of the INPHARED resource, providing a curated, regularly updated set of complete bacteriophage genomes with associated metadata and genome quality information, including CheckV assessments and taxonomy generated using taxMyPhage.

Building on the original database, INPHARED2 provides an expanded and improved reference resource for phage genomics; the updated resource and analysis are described in our INPHARED2 preprint. It provides an easy-to-use online search function alongside bulk data downloads.

Search INPHARED

Search by accession, description, host or taxonomy. The filters below reflect the initial INPHARED2 display specification.

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36350 matching reference genomes out of 36350. Search and filters are active; download will follow after the fields are finalised.

INPHARED2 search results

The results table contains the selected original taxonomy, CheckV, TaxMyPhage and PhageLeads fields. It can be scrolled horizontally for the full record.

Accession ▼ Description Genome Length (bp) molGC (%) Host Baltimore Group Lowest Taxa Genus Sub-family Family Order Class Phylum Kingdom Realm Isolation Host CheckV quality CheckV MIUVIG quality CheckV completeness CheckV completeness method TaxMyPhage genus TaxMyPhage species TaxMyPhage message PhageLeads lifestyle PhageLeads problematic genes
PV915825Gordonia phage Phomeo6745865.795GordoniaUnclassified UnclassifiedUnclassifiedUnclassifiedUnclassifiedUnclassifiedUnclassifiedUnclassifiedUnclassifiedUnclassified Gordonia terrae 3612High-qualityHigh-quality100.000AAI-based (high-confidence) FoxborovirusFoxborovirus emiannaCurrent ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus levellytic
PV915824Gordonia phage LilHam5559368.176GordoniaUnclassified UnclassifiedUnclassifiedUnclassifiedUnclassifiedUnclassifiedUnclassifiedUnclassifiedUnclassifiedUnclassified Gordonia terrae 3612High-qualityHigh-quality94.600AAI-based (high-confidence) KroosvirusKroosvirus new_nameThe number of expected genera is different from the predicted number of genus clusters. It will require more manual curationlytic
PV915823Arthrobacter phage Zippen5811751.477ArthrobacterUnclassified UnclassifiedUnclassifiedUnclassifiedUnclassifiedUnclassifiedUnclassifiedUnclassifiedUnclassifiedUnclassified Arthrobacter globiformis NRRL B-4225High-qualityHigh-quality100.000AAI-based (high-confidence) New_genusNew_speciesQuery is a new genus and species. You could try running again with if you larger distancelytic
PV915822Microbacterium phage Bramble5696162.722MicrobacteriumUnclassified UnclassifiedUnclassifiedUnclassifiedUnclassifiedUnclassifiedUnclassifiedUnclassifiedUnclassifiedUnclassified Microbacterium foliorum NRRL B-24224High-qualityHigh-quality99.860AAI-based (high-confidence) New_genusNew_speciesNo hits were found with the default settingslytic
PV915821Gordonia phage Baumdotcom5796668.140GordoniaUnclassified UnclassifiedUnclassifiedUnclassifiedUnclassifiedUnclassifiedUnclassifiedUnclassifiedUnclassifiedUnclassified Gordonia terrae CAG3High-qualityHigh-quality98.640AAI-based (high-confidence) KroosvirusKroosvirus new_nameThe number of expected genera is different from the predicted number of genus clusters. It will require more manual curationlytic
PV915820Arthrobacter phage Maruru6019167.786ArthrobacterUnclassified UnclassifiedUnclassifiedUnclassifiedUnclassifiedUnclassifiedUnclassifiedUnclassifiedUnclassifiedUnclassified Arthrobacter globiformis B-2979High-qualityHigh-quality98.560AAI-based (high-confidence) SonalivirusSonalivirus new_nameCurrent ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus leveltemperateintegrase orf_29
PV915819Arthrobacter phage RomansRevenge6202760.604ArthrobacterUnclassified UnclassifiedUnclassifiedUnclassifiedUnclassifiedUnclassifiedUnclassifiedUnclassifiedUnclassifiedUnclassified Arthrobacter sulfureus ATCC 19098CompleteHigh-quality100.000DTR (high-confidence) New_genusNew_speciesNo hits were found with the default settingslytic
PV915818Gordonia phage BetterYeti6043851.949GordoniaUnclassified UnclassifiedUnclassifiedUnclassifiedUnclassifiedUnclassifiedUnclassifiedUnclassifiedUnclassifiedUnclassified Gordonia rubripertincta NRRL B-16540High-qualityHigh-quality97.730AAI-based (high-confidence) KenoshavirusKenoshavirus new_nameCurrent ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus levellytic
PV915817Arthrobacter phage Audell4218758.653ArthrobacterUnclassified UnclassifiedUnclassifiedUnclassifiedUnclassifiedUnclassifiedUnclassifiedUnclassifiedUnclassifiedUnclassified Arthrobacter globiformis B-2979Low-qualityGenome-fragment30.110AAI-based (medium-confidence) New_genusNew_speciesNo hits were found with the default settingslytic
PV915816Curtobacterium phage Gumpizza3992270.803CurtobacteriumUnclassified UnclassifiedUnclassifiedUnclassifiedUnclassifiedUnclassifiedUnclassifiedUnclassifiedUnclassifiedUnclassified Curtobacterium flaccumfaciens NRRL B-59340High-qualityHigh-quality90.170AAI-based (high-confidence) New_genusNew_speciesNo hits were found with the default settingslytic
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