INPHARED2

INPHARED2 is the new home of the INPHARED resource, providing a curated, regularly updated set of complete bacteriophage genomes with associated metadata and genome quality information, including CheckV assessments and taxonomy generated using taxMyPhage.

Building on the original database, INPHARED2 provides an expanded and improved reference resource for phage genomics; the updated resource and analysis are described in our INPHARED2 preprint. It provides an easy-to-use online search function alongside bulk data downloads.

Explore INPHARED2 data visually

Create interactive summaries of genome metadata and download the resulting figures.

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Search INPHARED

Search by accession, description, host or taxonomy. The filters below reflect the initial INPHARED2 display specification.

Host (NCBI)

Family (NCBI)

Genus (TaxMyPhage)

CheckV quality

PhageLeads lifestyle

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36350 matching reference genomes out of 36350. Search and filters are active; download will follow after the fields are finalised.

INPHARED2 search results

The results table contains the selected original taxonomy, CheckV, TaxMyPhage and PhageLeads fields. It can be scrolled horizontally for the full record.

Accession ▼	Description	Genome Length (bp)	molGC (%)	Host	Baltimore Group	Lowest Taxa	Genus	Sub-family	Family	Order	Class	Phylum	Kingdom	Realm	Isolation Host	CheckV quality	CheckV MIUVIG quality	CheckV completeness	CheckV completeness method	TaxMyPhage genus	TaxMyPhage species	TaxMyPhage message	PhageLeads lifestyle	PhageLeads problematic genes
PV915845	Arthrobacter phage Circuit	49636	70.314	Arthrobacter	Unclassified	Unclassified	Unclassified	Unclassified	Unclassified	Unclassified	Unclassified	Unclassified	Unclassified	Unclassified	Arthrobacter globiformis B-2979	High-quality	High-quality	99.840	AAI-based (high-confidence)	Altadenavirus	Altadenavirus new_name	Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level	lytic
PV915844	Mycobacterium phage Tortoise12	42689	66.471	Mycobacterium	Unclassified	Unclassified	Unclassified	Unclassified	Unclassified	Unclassified	Unclassified	Unclassified	Unclassified	Unclassified	Mycobacterium smegmatis str. MC2 155	High-quality	High-quality	99.630	AAI-based (high-confidence)	Charlievirus	Charlievirus new_name	The number of expected genera is different from the predicted number of genus clusters. It will require more manual curation	temperate	integrase orf_34;immunity orf_35
PV915843	Arthrobacter phage Globfish	51397	62.757	Arthrobacter	Unclassified	Unclassified	Unclassified	Unclassified	Unclassified	Unclassified	Unclassified	Unclassified	Unclassified	Unclassified	Arthrobacter globiformis B-2979	High-quality	High-quality	97.840	AAI-based (high-confidence)	Richievirus	Richievirus new_name	Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level	temperate	integrase orf_36;integrase orf_39
PV915842	Mycobacterium phage AngelCake	68698	66.343	Mycobacterium	Unclassified	Unclassified	Unclassified	Unclassified	Unclassified	Unclassified	Unclassified	Unclassified	Unclassified	Unclassified	Mycobacterium smegmatis str. MC2 155	High-quality	High-quality	98.880	AAI-based (high-confidence)	Pegunavirus	Pegunavirus apizium	Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level	lytic
PV915841	Streptomyces phage Lishka	36221	72.621	Streptomyces	Unclassified	Unclassified	Unclassified	Unclassified	Unclassified	Unclassified	Unclassified	Unclassified	Unclassified	Unclassified	Streptomyces venezuelae ATCC 10712	High-quality	High-quality	98.500	AAI-based (high-confidence)	Austintatiousvirus	Austintatiousvirus austintatious	Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level	temperate	cro orf_29;integrase orf_45
PV915840	Mycobacterium phage Etoile	47527	67.263	Mycobacterium	Unclassified	Unclassified	Unclassified	Unclassified	Unclassified	Unclassified	Unclassified	Unclassified	Unclassified	Unclassified	Mycobacterium smegmatis str. MC2 155	High-quality	High-quality	97.010	AAI-based (high-confidence)	Fishburnevirus	Fishburnevirus fishburne	Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level	temperate	integrase orf_30;immunity orf_31;antirepressor orf_34
PV915839	Curtobacterium phage Razzleberry	18500	53.686	Curtobacterium	Unclassified	Unclassified	Unclassified	Unclassified	Unclassified	Unclassified	Unclassified	Unclassified	Unclassified	Unclassified	Curtobacterium flaccumfaciens NRRL B-59340	Complete	High-quality	100.000	ITR (high-confidence)	New_genus	New_species	No hits were found with the default settings	lytic
PV915838	Microbacterium phage JimmyPG	54855	60.133	Microbacterium	Unclassified	Unclassified	Unclassified	Unclassified	Unclassified	Unclassified	Unclassified	Unclassified	Unclassified	Unclassified	Microbacterium foliorum NRRL B-24224	High-quality	High-quality	100.000	AAI-based (high-confidence)	Akonivirus	Akonivirus new_name	Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level	lytic
PV915837	Arthrobacter phage Altostratus	39715	63.714	Arthrobacter	Unclassified	Unclassified	Unclassified	Unclassified	Unclassified	Unclassified	Unclassified	Unclassified	Unclassified	Unclassified	Arthrobacter globiformis B-2979	High-quality	High-quality	95.270	AAI-based (high-confidence)	New_genus	New_species	No hits were found with the default settings	temperate	integrase orf_43
PV915836	Microbacterium phage Kosier	54855	59.940	Microbacterium	Unclassified	Unclassified	Unclassified	Unclassified	Unclassified	Unclassified	Unclassified	Unclassified	Unclassified	Unclassified	Microbacterium foliorum NRRL B-24224	High-quality	High-quality	100.000	AAI-based (high-confidence)	New_genus	New_species	Query is a new genus and species. You could try running again with if you larger distance	lytic