INPHARED2

INPHARED2 is the new home of the INPHARED resource, providing a curated, regularly updated set of complete bacteriophage genomes with associated metadata and genome quality information, including CheckV assessments and taxonomy generated using taxMyPhage.

Building on the original database, INPHARED2 provides an expanded and improved reference resource for phage genomics; the updated resource and analysis are described in our INPHARED2 preprint. It provides an easy-to-use online search function alongside bulk data downloads. The online database was last updated on 03 October 2026

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Search by accession, description, host or taxonomy. The filters below reflect the initial INPHARED2 display specification.

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37387 matching reference genomes out of 37387. Search and filters are active; download will follow after the fields are finalised.

INPHARED2 search results

The results table contains the selected original taxonomy, CheckV, TaxMyPhage and PhageLeads fields. It can be scrolled horizontally for the full record.

Accession ▼	Description	Genome Length (bp)	molGC (%)	Host	Baltimore Group	Lowest Taxa	Genus	Sub-family	Family	Order	Class	Phylum	Kingdom	Realm	Isolation Host	CheckV quality	CheckV MIUVIG quality	CheckV completeness	CheckV completeness method	TaxMyPhage genus	TaxMyPhage species	TaxMyPhage message	PhageLeads lifestyle	PhageLeads problematic genes
PX694289	Klebsiella phage Junood_PK2	147170	44.624	Klebsiella	Group I	Felixounavirus	Felixounavirus	Ounavirinae	Andersonviridae	Unclassified	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Klebsiella pneumoniae	Complete	High-quality	100.000	DTR (high-confidence)	Mydovirus	Mydovirus new_name	The number of expected genera is different from the predicted number of genus clusters. It will require more manual curation	lytic
PX694288	Klebsiella phage Junood_PK3	115660	45.405	Klebsiella	Group I	Casjensviridae	Unclassified	Unclassified	Casjensviridae	Unclassified	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Klebsiella pneumoniae	High-quality	High-quality	100.000	AAI-based (high-confidence)	Sugarlandvirus	Sugarlandvirus new_name	Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level	lytic
PX694287	Salmonella phage JU_PK4	58957	56.416	Salmonella	Group I	Teseptimavirus	Teseptimavirus	Studiervirinae	Autotranscriptaviridae	Autographivirales	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Salmonella enterica subsp. enterica serovar Typhi	Complete	High-quality	100.000	DTR (high-confidence)	Chivirus	Chivirus siskin	Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level	temperate	integrase orf_11
PX694286	Salmonella phage JU_PK3	87880	39.041	Salmonella	Group I	Unclassified	Unclassified	Unclassified	Unclassified	Unclassified	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Salmonella enterica subsp. enterica serovar Typhi	Complete	High-quality	100.000	DTR (high-confidence)	Felixounavirus	Felixounavirus new_name	Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level	lytic
PX694285	Salmonella phage JU_PK2	166123	35.515	Salmonella	Group I	Unclassified	Unclassified	Unclassified	Unclassified	Unclassified	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Salmonella enterica subsp. enterica serovar Typhi	Complete	High-quality	100.000	DTR (high-confidence)	Tequatrovirus	Tequatrovirus new_name	Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level	lytic
PX693206	Klebsiella phage XDRKpn-3	50029	48.198	Klebsiella	Unclassified	Unclassified	Unclassified	Unclassified	Unclassified	Unclassified	Unclassified	Unclassified	Unclassified	Unclassified	Klebsiella pneumoniae (clinical isolate)	High-quality	High-quality	100.000	AAI-based (high-confidence)	Geezettvirus	Geezettvirus geezett	The number of expected genera is different from the predicted number of genus clusters. It will require more manual curation	lytic
PX692685	Vibrio phage vB_VpaS_GD16	76514	48.787	Vibrio	Unclassified	Unclassified	Unclassified	Unclassified	Unclassified	Unclassified	Unclassified	Unclassified	Unclassified	Unclassified	Vibrio parahaemolyticus D3-B1-2	Complete	High-quality	100.000	DTR (high-confidence)	Mardecavirus	Mardecavirus new_name	The number of expected genera is different from the predicted number of genus clusters. It will require more manual curation	lytic
PX692498	Salmonella phage GH_STP3	243914	48.549	Salmonella	Unclassified	Unclassified	Unclassified	Unclassified	Unclassified	Unclassified	Unclassified	Unclassified	Unclassified	Unclassified	Salmonella enterica subsp. enterica serovar Typhimurium RSKK95091	Complete	High-quality	100.000	DTR (high-confidence)	Seoulvirus	Seoulvirus SPN3US	Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level	lytic
PX692497	Salmonella phage GH_STP1	242117	48.508	Salmonella	Unclassified	Unclassified	Unclassified	Unclassified	Unclassified	Unclassified	Unclassified	Unclassified	Unclassified	Unclassified	Salmonella enterica subsp. enterica serovar Typhimurium RSKK95091	Complete	High-quality	100.000	DTR (high-confidence)	Seoulvirus	Seoulvirus new_name	Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level	lytic
PX684432	Acinetobacter phage vB_AbaP_BW4	25058	40.466	Acinetobacter	Unclassified	Unclassified	Unclassified	Unclassified	Unclassified	Unclassified	Unclassified	Unclassified	Unclassified	Unclassified	Acinetobacter baumannii Burn-9	Medium-quality	Genome-fragment	60.380	AAI-based (medium-confidence)	New_genus	New_species	No hits were found with the default settings	temperate	integrase orf_1