INPHARED2
INPHARED2
INPHARED2 is the new home of the INPHARED resource, providing a curated, regularly updated set of complete bacteriophage genomes with associated metadata and genome quality information, including CheckV assessments and taxonomy generated using taxMyPhage.
Building on the original database, INPHARED2 provides an expanded and improved reference resource for phage genomics; the updated resource and analysis are described in our INPHARED2 preprint. It provides an easy-to-use online search function alongside bulk data downloads.
Explore INPHARED2 data visually
Create interactive summaries of genome metadata and download the resulting figures.
Search INPHARED
Search by accession, description, host or taxonomy. The filters below reflect the initial INPHARED2 display specification.
36350 matching reference genomes out of 36350. Search and filters are active; download will follow after the fields are finalised.
INPHARED2 search results
The results table contains the selected original taxonomy, CheckV, TaxMyPhage and PhageLeads fields. It can be scrolled horizontally for the full record.
| Accession ▼ | Description | Genome Length (bp) | molGC (%) | Host | Baltimore Group | Lowest Taxa | Genus | Sub-family | Family | Order | Class | Phylum | Kingdom | Realm | Isolation Host | CheckV quality | CheckV MIUVIG quality | CheckV completeness | CheckV completeness method | TaxMyPhage genus | TaxMyPhage species | TaxMyPhage message | PhageLeads lifestyle | PhageLeads problematic genes |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| PX021922 | Salmonella phage PZG166 | 46589 | 45.745 | Salmonella | Group I | Saltrevirus | Saltrevirus | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Salmonella enterica subsp. enterica serovar Pullorum ZG166 | Complete | High-quality | 100.000 | DTR (high-confidence) | New_genus | New_species | Query is a new genus and species. You could try running again with if you larger distance | lytic | |
| PX021575 | Staphylococcus phage vB_SeqP_SEP | 140258 | 30.290 | Staphylococcus | Group I | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Staphylococcus sp. ATCC 29740 | High-quality | High-quality | 99.070 | AAI-based (high-confidence) | Kayvirus | Kayvirus new_name | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | temperate | integrase orf_66 |
| PX021574 | Staphylococcus phage vB_SauP_RLup12 | 43166 | 34.854 | Staphylococcus | Group I | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Staphylococcus sp. ATCC 29740 | High-quality | High-quality | 100.000 | AAI-based (high-confidence) | Phietavirus | Phietavirus NM4 | The number of expected genera is different from the predicted number of genus clusters. It will require more manual curation | temperate | integrase orf_1;cro orf_5;antirepressor orf_9;integrase orf_39 |
| PX021573 | Staphylococcus phage vB_SauP_RLup11 | 43167 | 34.892 | Staphylococcus | Group I | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Staphylococcus sp. ATCC 29740 | High-quality | High-quality | 100.000 | AAI-based (high-confidence) | Phietavirus | Phietavirus NM4 | The number of expected genera is different from the predicted number of genus clusters. It will require more manual curation | temperate | integrase orf_1;cro orf_5;antirepressor orf_9;integrase orf_39 |
| PX021363 | Aeromonas phage pAEv1 | 61373 | 61.309 | Aeromonas | Group I | Casjensviridae | Unclassified | Unclassified | Casjensviridae | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Aeromonas veronii | Complete | High-quality | 100.000 | DTR (high-confidence) | Sharonstreetvirus | Sharonstreetvirus new_name | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | lytic | |
| PX021331 | Escherichia phage Serwaa | 62144 | 50.983 | Escherichia | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Escherichia coli | High-quality | High-quality | 100.000 | AAI-based (high-confidence) | New_genus | New_species | No hits were found with the default settings | lytic | |
| PX020966 | Ralstonia phage vB_RsoP_BMB116 | 82991 | 62.869 | Ralstonia | Group I | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Ralstonia solanacearum BMB_Rs3221-2 | High-quality | High-quality | 100.000 | AAI-based (medium-confidence) | New_genus | New_species | No hits were found with the default settings | temperate | integrase orf_79 |
| PX020959 | Alishewanella phage LSH1 | 38699 | 46.957 | Alishewanella | Group I | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Alishewenalla sp. HL-SH05 | High-quality | High-quality | 94.550 | AAI-based (medium-confidence) | New_genus | New_species | No hits were found with the default settings | lytic | |
| PX000101 | Serratia phage vB_SmaS_12 | 59105 | 45.302 | Serratia | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Serratia marcescens UMH9 | High-quality | High-quality | 98.560 | AAI-based (high-confidence) | New_genus | New_species | No hits were found with the default settings | lytic | |
| PX000100 | Serratia phage vB_SmaP_10b1 | 42797 | 57.352 | Serratia | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Serratia marcescens UMH9 | High-quality | High-quality | 100.000 | AAI-based (high-confidence) | New_genus | New_species | No hits were found with the default settings | lytic |