INPHARED2

INPHARED2 is the new home of the INPHARED resource, providing a curated, regularly updated set of complete bacteriophage genomes with associated metadata and genome quality information, including CheckV assessments and taxonomy generated using taxMyPhage.

Building on the original database, INPHARED2 provides an expanded and improved reference resource for phage genomics; the updated resource and analysis are described in our INPHARED2 preprint. It provides an easy-to-use online search function alongside bulk data downloads. The online database was last updated on 03 October 2026

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Search by accession, description, host or taxonomy. The filters below reflect the initial INPHARED2 display specification.

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37654 matching reference genomes out of 37654. Search and filters are active; download will follow after the fields are finalised.

INPHARED2 search results

The results table contains the selected original taxonomy, CheckV, TaxMyPhage and PhageLeads fields. It can be scrolled horizontally for the full record.

Accession ▼	Description	Genome Length (bp)	molGC (%)	Host	Baltimore Group	Lowest Taxa	Genus	Sub-family	Family	Order	Class	Phylum	Kingdom	Realm	Isolation Host	CheckV quality	CheckV MIUVIG quality	CheckV completeness	CheckV completeness method	TaxMyPhage genus	TaxMyPhage species	TaxMyPhage message	PhageLeads lifestyle
MN850601	Escherichia phage inny	147483	37.394	Escherichia	Group I	Justusliebigvirus	Justusliebigvirus	Stephanstirmvirinae	Unclassified	Unclassified	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Escherichia coli K-12 subsr. MG1655	High-quality	High-quality	97.570	AAI-based (high-confidence)	Justusliebigvirus	Justusliebigvirus alia	Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level	lytic
MN850600	Escherichia phage haarsle	48613	44.038	Escherichia	Group I	Hanrivervirus	Hanrivervirus	Tempevirinae	Drexlerviridae	Unclassified	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Escherichia coli K-12 subsr. MG1655	High-quality	High-quality	96.300	AAI-based (high-confidence)	Hanrivervirus	Hanrivervirus haarsle	Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level	lytic
MN850599	Escherichia phage lillemer	5492	47.141	Escherichia	Group II	Unclassified	Unclassified	Unclassified	Unclassified	Bullavirales	Microviricetes	Phixviricota	Sangervirae	Floreoviria	Escherichia coli K-12 subsr. MG1655	High-quality	High-quality	99.530	AAI-based (high-confidence)	New_genus	New_species	No hits were found with the default settings	unknown
MN850598	Escherichia phage nieznany	144998	39.056	Escherichia	Group I	Phapecoctavirus	Phapecoctavirus	Stephanstirmvirinae	Unclassified	Unclassified	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Escherichia coli K-12 subsr. MG1655	High-quality	High-quality	95.680	AAI-based (high-confidence)	Phapecoctavirus	Phapecoctavirus nieznany	Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level	lytic
MN850597	Escherichia phage isim	138289	43.644	Escherichia	Group I	Vequintavirus	Vequintavirus	Vequintavirinae	Unclassified	Unclassified	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Escherichia coli K-12 subsr. MG1655	High-quality	High-quality	98.580	AAI-based (high-confidence)	Vequintavirus	Vequintavirus murica	Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level	lytic
MN850596	Escherichia phage tonn	51012	44.472	Escherichia	Group I	Warwickvirus	Warwickvirus	Tempevirinae	Drexlerviridae	Unclassified	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Escherichia coli K-12 subsr. MG1655	High-quality	High-quality	100.000	AAI-based (high-confidence)	Warwickvirus	Warwickvirus tonn	Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level	lytic
MN850595	Escherichia phage naswa	138583	43.585	Escherichia	Group I	Vequintavirus	Vequintavirus	Vequintavirinae	Unclassified	Unclassified	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Escherichia coli K-12 subsr. MG1655	High-quality	High-quality	98.790	AAI-based (high-confidence)	Vequintavirus	Vequintavirus pangalan	Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level	lytic
MN850594	Escherichia phage flopper	52092	44.203	Escherichia	Group I	Carltongylesvirus	Carltongylesvirus	Cleopatravirinae	Chaseviridae	Unclassified	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Escherichia coli K-12 subsr. MG1655	High-quality	High-quality	98.410	AAI-based (high-confidence)	Carltongylesvirus	Carltongylesvirus flopper	Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level	lytic
MN850593	Escherichia phage inoa	138710	43.593	Escherichia	Group I	Vequintavirus	Vequintavirus	Vequintavirinae	Unclassified	Unclassified	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Escherichia coli K-12 subsr. MG1655	High-quality	High-quality	98.870	AAI-based (high-confidence)	Vequintavirus	Vequintavirus A512	Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level	lytic
MN850592	Escherichia phage aldrigsur	42379	55.726	Escherichia	Group I	Bonnellvirus	Bonnellvirus	Stentvirinae	Autoscriptoviridae	Autographivirales	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Escherichia coli K-12 subsr. MG1655	High-quality	High-quality	100.000	AAI-based (high-confidence)	Bonnellvirus	Bonnellvirus altidsur	Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level	lytic