INPHARED2
INPHARED2 is the new home of the INPHARED resource, providing a curated, regularly updated set of complete bacteriophage genomes with associated metadata and genome quality information, including CheckV assessments and taxonomy generated using taxMyPhage.
Building on the original database, INPHARED2 provides an expanded and improved reference resource for phage genomics; the updated resource and analysis are described in our INPHARED2 preprint. It provides an easy-to-use online search function alongside bulk data downloads. The online database was last updated on 03 October 2026
Explore INPHARED2 data visually
Create interactive summaries of genome metadata and download the resulting figures.
Search INPHARED
Search by accession, description, host or taxonomy. The filters below reflect the initial INPHARED2 display specification.
37654 matching reference genomes out of 37654. Search and filters are active; download will follow after the fields are finalised.
INPHARED2 search results
The results table contains the selected original taxonomy, CheckV, TaxMyPhage and PhageLeads fields. It can be scrolled horizontally for the full record.
| Accession ▼ | Description | Genome Length (bp) | molGC (%) | Host | Baltimore Group | Lowest Taxa | Genus | Sub-family | Family | Order | Class | Phylum | Kingdom | Realm | Isolation Host | CheckV quality | CheckV MIUVIG quality | CheckV completeness | CheckV completeness method | TaxMyPhage genus | TaxMyPhage species | TaxMyPhage message | PhageLeads lifestyle | PhageLeads problematic genes |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| MN862337 | Kummerowia striata gokushovirus | 4770 | 59.455 | Unspecified | Group II | Unclassified | Unclassified | Unclassified | Unclassified | Gokushovirales | Microviricetes | Phixviricota | Sangervirae | Floreoviria | Kummerowia striata | High-quality | High-quality | 100.000 | AAI-based (high-confidence) | New_genus | New_species | No hits were found with the default settings | unknown | |
| MN862336 | Kummerowia striata gokushovirus | 4497 | 54.481 | Unspecified | Group II | Unclassified | Unclassified | Unclassified | Unclassified | Gokushovirales | Microviricetes | Phixviricota | Sangervirae | Floreoviria | Kummerowia striata | High-quality | High-quality | 94.730 | AAI-based (high-confidence) | New_genus | New_species | No hits were found with the default settings | unknown | |
| MN862335 | Kummerowia striata gokushovirus | 4398 | 49.613 | Unspecified | Group II | Unclassified | Unclassified | Unclassified | Unclassified | Gokushovirales | Microviricetes | Phixviricota | Sangervirae | Floreoviria | Kummerowia striata | High-quality | High-quality | 93.590 | AAI-based (medium-confidence) | New_genus | New_species | No hits were found with the default settings | unknown | |
| MN862334 | Trichosanthes kirilowii gokushovirus | 4756 | 42.704 | Unspecified | Group II | Unclassified | Unclassified | Unclassified | Unclassified | Gokushovirales | Microviricetes | Phixviricota | Sangervirae | Floreoviria | Trichosanthes kirilowii | High-quality | High-quality | 99.210 | AAI-based (high-confidence) | New_genus | New_species | No hits were found with the default settings | unknown | |
| MN862333 | Trichosanthes kirilowii gokushovirus | 4668 | 55.141 | Unspecified | Group II | Unclassified | Unclassified | Unclassified | Unclassified | Gokushovirales | Microviricetes | Phixviricota | Sangervirae | Floreoviria | Trichosanthes kirilowii | High-quality | High-quality | 100.000 | AAI-based (high-confidence) | New_genus | New_species | No hits were found with the default settings | unknown | |
| MN862068 | Brevundimonas phage vB_BsubS-Delta | 87225 | 62.498 | Brevundimonas | Group I | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Brevundimonas subvibrioides ATCC 15264 | High-quality | High-quality | 99.940 | AAI-based (high-confidence) | New_genus | New_species | No hits were found with the default settings | temperate | integrase orf_7 |
| MN857617 | Bacillus phage SRT01hs | 20784 | 34.945 | Bacillus | Group I | Gaunavirus | Gaunavirus | Tatarstanvirinae | Salasmaviridae | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Bacillus safensis MGS1 | High-quality | High-quality | 99.350 | AAI-based (high-confidence) | Gaunavirus | Gaunavirus SRT01hs | The number of expected genera is different from the predicted number of genus clusters. It will require more manual curation | lytic | |
| MN857473 | Caulobacter phage S2B | 45682 | 66.766 | Caulobacter | Group I | Sumtervirus | Sumtervirus | Unclassified | Unclassified | Autographivirales | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Caulobacter vibrioides CB15 | Complete | High-quality | 100.000 | DTR (high-confidence) | Sumtervirus | Sumtervirus S2B | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | temperate | integrase orf_49 |
| MN854830 | Kochikohdavirus PBEF19 | 141520 | 35.907 | Unspecified | Group I | Kochikohdavirus | Kochikohdavirus | Brockvirinae | Herelleviridae | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Enterococcus faecalis | High-quality | High-quality | 100.000 | AAI-based (high-confidence) | Kochikohdavirus | Kochikohdavirus PBEF19 | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | lytic | |
| MN850656 | Flavobacterium phage fF4 | 31958 | 36.035 | Flavobacterium | Group I | Winoviridae | Unclassified | Unclassified | Winoviridae | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Flavobacterium columnare NBRC 100251 = ATCC 23463 | Low-quality | Genome-fragment | 48.880 | HMM-based (lower-bound) | New_genus | New_species | No hits were found with the default settings | lytic |