INPHARED2

INPHARED2 is the new home of the INPHARED resource, providing a curated, regularly updated set of complete bacteriophage genomes with associated metadata and genome quality information, including CheckV assessments and taxonomy generated using taxMyPhage.

Building on the original database, INPHARED2 provides an expanded and improved reference resource for phage genomics; the updated resource and analysis are described in our INPHARED2 preprint. It provides an easy-to-use online search function alongside bulk data downloads. The online database was last updated on 03 October 2026

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Search by accession, description, host or taxonomy. The filters below reflect the initial INPHARED2 display specification.

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37654 matching reference genomes out of 37654. Search and filters are active; download will follow after the fields are finalised.

INPHARED2 search results

The results table contains the selected original taxonomy, CheckV, TaxMyPhage and PhageLeads fields. It can be scrolled horizontally for the full record.

Accession ▼	Description	Genome Length (bp)	molGC (%)	Host	Baltimore Group	Lowest Taxa	Genus	Sub-family	Family	Order	Class	Phylum	Kingdom	Realm	Isolation Host	CheckV quality	CheckV MIUVIG quality	CheckV completeness	CheckV completeness method	TaxMyPhage genus	TaxMyPhage species	TaxMyPhage message	PhageLeads lifestyle	PhageLeads problematic genes
MN908683	Mycobacterium phage StressBall	47915	67.282	Mycobacterium	Group I	Fishburnevirus	Fishburnevirus	Pclasvirinae	Unclassified	Unclassified	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Mycobacterium smegmatis str. MC2 155	High-quality	High-quality	97.810	AAI-based (high-confidence)	Fishburnevirus	Fishburnevirus kilkor	Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level	temperate	integrase orf_31;immunity orf_32;antirepressor orf_35
MN906996	Pseudomonas phage LY218	73083	54.873	Pseudomonas	Group I	Litunavirus	Litunavirus	Migulavirinae	Schitoviridae	Unclassified	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Pseudomonas aeruginosa ATCC 27853	High-quality	High-quality	100.000	AAI-based (high-confidence)	Litunavirus	Litunavirus Ab09	Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level	lytic
MN905160	Pseudomonas phage PE09	99455	48.141	Pseudomonas	Group I	Otagovirus	Otagovirus	Gorskivirinae	Vandenendeviridae	Unclassified	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Pseudomonas syringae pv. actinidiae	High-quality	High-quality	100.000	AAI-based (high-confidence)	Otagovirus	Otagovirus PE09	Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level	lytic
MN904510	Staphylococcus phage vB_SauS-SAP27	43444	34.946	Staphylococcus	Group I	Phietavirus	Phietavirus	Azeredovirinae	Unclassified	Unclassified	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Staphylococcus aureus subsp. aureus RN4220	High-quality	High-quality	100.000	AAI-based (high-confidence)	Phietavirus	Phietavirus SAP27	The number of expected genera is different from the predicted number of genus clusters. It will require more manual curation	temperate	integrase orf_10;antirepressor orf_38;cro orf_41;cro orf_42;integrase orf_45
MN904502	Listeria phage LP-018	65284	36.395	Listeria	Group I	Homburgvirus	Homburgvirus	Unclassified	Unclassified	Unclassified	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Listeria monocytogenes FSL F6-367	High-quality	High-quality	97.210	AAI-based (high-confidence)	Homburgvirus	Homburgvirus LP37	Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level	lytic
MN901924	Pseudomonas phage vB_PaeP_PE3	43583	62.300	Pseudomonas	Group I	Phikmvvirus	Phikmvvirus	Krylovirinae	Autoscriptoviridae	Autographivirales	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Pseudomonas aeruginosa PAO1 DSM22644	Complete	High-quality	100.000	DTR (high-confidence)	Phikmvvirus	Phikmvvirus PE3	Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level	lytic
MN901521	Halorubrum virus Serpecor1	74196	57.027	Halorubrum	Group I	Haloferacalesvirus	Haloferacalesvirus	Unclassified	Hafunaviridae	Thumleimavirales	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Halorubrum coriense	Complete	High-quality	100.000	DTR (high-confidence)	New_genus	New_species	No hits were found with the default settings	lytic
MN901520	Halorubrum virus Hardycor2	77342	55.641	Halorubrum	Group I	Haloferacalesvirus	Haloferacalesvirus	Unclassified	Hafunaviridae	Thumleimavirales	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Halorubrum coriense	Complete	High-quality	100.000	DTR (high-confidence)	New_genus	New_species	No hits were found with the default settings	temperate	integrase orf_40
MN895438	Escherichia phage teqdroes	166833	35.438	Escherichia	Group I	Tequatrovirus	Tequatrovirus	Tevenvirinae	Straboviridae	Pantevenvirales	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Escherichia coli MG1655 K-12	High-quality	High-quality	99.220	AAI-based (high-confidence)	Tequatrovirus	Tequatrovirus teqdroes	Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level	lytic
MN895437	Escherichia phage teqskov	165017	35.359	Escherichia	Group I	Tequatrovirus	Tequatrovirus	Tevenvirinae	Straboviridae	Pantevenvirales	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Escherichia coli MG1655 K-12	High-quality	High-quality	98.270	AAI-based (high-confidence)	Tequatrovirus	Tequatrovirus teqskov	Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level	lytic