INPHARED2
INPHARED2 is the new home of the INPHARED resource, providing a curated, regularly updated set of complete bacteriophage genomes with associated metadata and genome quality information, including CheckV assessments and taxonomy generated using taxMyPhage.
Building on the original database, INPHARED2 provides an expanded and improved reference resource for phage genomics; the updated resource and analysis are described in our INPHARED2 preprint. It provides an easy-to-use online search function alongside bulk data downloads. The online database was last updated on 03 October 2026
Explore INPHARED2 data visually
Create interactive summaries of genome metadata and download the resulting figures.
Search INPHARED
Search by accession, description, host or taxonomy. The filters below reflect the initial INPHARED2 display specification.
37654 matching reference genomes out of 37654. Search and filters are active; download will follow after the fields are finalised.
INPHARED2 search results
The results table contains the selected original taxonomy, CheckV, TaxMyPhage and PhageLeads fields. It can be scrolled horizontally for the full record.
| Accession ▼ | Description | Genome Length (bp) | molGC (%) | Host | Baltimore Group | Lowest Taxa | Genus | Sub-family | Family | Order | Class | Phylum | Kingdom | Realm | Isolation Host | CheckV quality | CheckV MIUVIG quality | CheckV completeness | CheckV completeness method | TaxMyPhage genus | TaxMyPhage species | TaxMyPhage message | PhageLeads lifestyle | PhageLeads problematic genes |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| MN988487 | Rhizobium phage RHph_Y1_10 | 43230 | 57.904 | Rhizobium | Group I | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Rhizobium etli Y1_10 | High-quality | High-quality | 100.000 | AAI-based (high-confidence) | New_genus | New_species | No hits were found with the default settings | temperate | integrase orf_16 |
| MN988486 | Rhizobium phage RHph_Y68 | 152762 | 49.387 | Rhizobium | Group I | Trinifflemingvirus | Trinifflemingvirus | Staniewskivirinae | Pootjesviridae | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Rhizobium sp. TUX16P | High-quality | High-quality | 98.560 | AAI-based (high-confidence) | Trinifflemingvirus | Trinifflemingvirus Y68 | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | lytic | |
| MN988485 | Rhizobium phage RHph_Y67 | 4801 | 56.697 | Rhizobium | Group II | Piticivirus | Piticivirus | Unclassified | Mazaviridae | Amoyvirales | Microviricetes | Phixviricota | Sangervirae | Floreoviria | Rhizobium phaseoli TUX10P | Not-determined | Genome-fragment | New_genus | New_species | No hits were found with the default settings | unknown | |||
| MN988484 | Rhizobium phage RHph_Y60 | 69093 | 56.505 | Rhizobium | Group I | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Rhizobium etli TAL182 | High-quality | High-quality | 99.530 | AAI-based (high-confidence) | New_genus | New_species | No hits were found with the default settings | lytic | |
| MN988483 | Rhizobium phage RHph_Y38 | 77869 | 45.869 | Rhizobium | Group I | Acanvirus | Acanvirus | Demetervirinae | Schitoviridae | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Rhizobium phaseoli BRASIL5 | High-quality | High-quality | 100.000 | AAI-based (high-confidence) | Acanvirus | Acanvirus Y38 | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | lytic | |
| MN988482 | Rhizobium phage RHph_Y17 | 54023 | 56.489 | Rhizobium | Group I | Kleczkowskavirus | Kleczkowskavirus | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Rhizobium phaseoli R630 | High-quality | High-quality | 99.760 | AAI-based (high-confidence) | Kleczkowskavirus | Kleczkowskavirus new_name | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | lytic | |
| MN988481 | Rhizobium phage RHph_TM3_4A | 6034 | 58.402 | Rhizobium | Group II | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Microviricetes | Phixviricota | Sangervirae | Floreoviria | Rhizobium etli T3_4 | High-quality | High-quality | 100.000 | AAI-based (medium-confidence) | New_genus | New_species | No hits were found with the default settings | unknown | |
| MN988480 | Rhizobium phage RHph_TM1_10A | 6034 | 58.402 | Rhizobium | Group II | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Microviricetes | Phixviricota | Sangervirae | Floreoviria | Rhizobium etli T1_10 | High-quality | High-quality | 100.000 | AAI-based (medium-confidence) | New_genus | New_species | No hits were found with the default settings | unknown | |
| MN988479 | Rhizobium phage RHph_TM15 | 6034 | 58.436 | Rhizobium | Group II | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Microviricetes | Phixviricota | Sangervirae | Floreoviria | Rhizobium phaseoli R620 | High-quality | High-quality | 100.000 | AAI-based (medium-confidence) | New_genus | New_species | No hits were found with the default settings | unknown | |
| MN988478 | Rhizobium phage RHph_TM3_3_7A | 6037 | 58.489 | Rhizobium | Group II | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Microviricetes | Phixviricota | Sangervirae | Floreoviria | Rhizobium etli T3_7 | High-quality | High-quality | 100.000 | AAI-based (medium-confidence) | New_genus | New_species | No hits were found with the default settings | unknown |