Becky Mayer Centre for Phage Research
BMCPR PhageBank
INPHARED2

INPHARED2

INPHARED2 is the new home of the INPHARED resource, providing a curated, regularly updated set of complete bacteriophage genomes with associated metadata and genome quality information, including CheckV assessments and taxonomy generated using taxMyPhage.

Building on the original database, INPHARED2 provides an expanded and improved reference resource for phage genomics; the updated resource and analysis are described in our INPHARED2 preprint. It provides an easy-to-use online search function alongside bulk data downloads. The online database was last updated on 03 October 2026

Search INPHARED

Search by accession, description, host or taxonomy. The filters below reflect the initial INPHARED2 display specification.

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37387 matching reference genomes out of 37387. Search and filters are active; download will follow after the fields are finalised.

INPHARED2 search results

The results table contains the selected original taxonomy, CheckV, TaxMyPhage and PhageLeads fields. It can be scrolled horizontally for the full record.

Accession ▼ Description Genome Length (bp) molGC (%) Host Baltimore Group Lowest Taxa Genus Sub-family Family Order Class Phylum Kingdom Realm Isolation Host CheckV quality CheckV MIUVIG quality CheckV completeness CheckV completeness method TaxMyPhage genus TaxMyPhage species TaxMyPhage message PhageLeads lifestyle PhageLeads problematic genes
PX794754Escherichia phage TaoLab_344417654.604EscherichiaUnclassified UnclassifiedUnclassifiedUnclassifiedUnclassifiedUnclassifiedUnclassifiedUnclassifiedUnclassifiedUnclassified Escherichia coliCompleteHigh-quality100.000DTR (high-confidence) DhillonvirusDhillonvirus new_nameCurrent ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus levellytic
PX794727Mycobacterium phage 2501C5517961.792MycobacteriumUnclassified UnclassifiedUnclassifiedUnclassifiedUnclassifiedUnclassifiedUnclassifiedUnclassifiedUnclassifiedUnclassified Mycobacterium smegmatis str. MC2 155High-qualityHigh-quality95.830AAI-based (high-confidence) CheoctovirusCheoctovirus new_nameThe number of expected genera is different from the predicted number of genus clusters. It will require more manual curationtemperatecro orf_35;integrase orf_38;immunity orf_43
PX794726Mycobacterium phage MP24455071163.343MycobacteriumUnclassified UnclassifiedUnclassifiedUnclassifiedUnclassifiedUnclassifiedUnclassifiedUnclassifiedUnclassifiedUnclassified Mycobacterium smegmatis str. MC2 155High-qualityHigh-quality96.350AAI-based (high-confidence) TurbidovirusTurbidovirus new_nameCurrent ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus leveltemperateintegrase orf_30
PX794723Sinorhizobium phage AP-20212159927.056SinorhizobiumUnclassified UnclassifiedUnclassifiedUnclassifiedUnclassifiedUnclassifiedUnclassifiedUnclassifiedUnclassifiedUnclassified Sinorhizobium meliloti Md3/4CompleteHigh-quality100.000DTR (medium-confidence) New_genusNew_speciesNo hits were found with the default settingstemperateintegrase orf_130
PX794722Sinorhizobium phage AP-20-A4942643.190SinorhizobiumUnclassified UnclassifiedUnclassifiedUnclassifiedUnclassifiedUnclassifiedUnclassifiedUnclassifiedUnclassifiedUnclassified Sinorhizobium meliloti Md3/4CompleteHigh-quality100.000DTR (high-confidence) New_genusNew_speciesNo hits were found with the default settingslytic
PX789363Vibrio phage PHZU00024758743.220VibrioGroup I ZobellviridaeUnclassifiedUnclassifiedZobellviridaeUnclassifiedCaudoviricetesUroviricotaHeunggongviraeDuplodnaviria Vibrio harveyiHigh-qualityHigh-quality98.300AAI-based (high-confidence) New_genusNew_speciesNo hits were found with the default settingslytic
PX789331Pseudoxanthomonas phage PT847565359.508PseudoxanthomonasGroup II InoviridaeUnclassifiedUnclassifiedInoviridaeTubulaviralesFaserviricetesHofneiviricotaLoebviraeFloreoviria Pseudoxanthomonas taiwanensis S2247Medium-qualityGenome-fragment78.250AAI-based (high-confidence) New_genusNew_speciesNo hits were found with the default settingsunknown
PX789330Pseudoxanthomonas phage PT4564471863.476PseudoxanthomonasGroup I UnclassifiedUnclassifiedUnclassifiedUnclassifiedUnclassifiedCaudoviricetesUroviricotaHeunggongviraeDuplodnaviria Pseudoxanthomonas taiwanensis E2456High-qualityHigh-quality92.500AAI-based (high-confidence) New_genusNew_speciesQuery is a new genus and species. You could try running again with if you larger distancelytic
PX789329Pseudoxanthomonas phage PT8165697256.472PseudoxanthomonasGroup I UnclassifiedUnclassifiedUnclassifiedUnclassifiedUnclassifiedCaudoviricetesUroviricotaHeunggongviraeDuplodnaviria Pseudoxanthomonas taiwanensis T216Medium-qualityGenome-fragment89.980AAI-based (medium-confidence) New_genusNew_speciesNo hits were found with the default settingslytic
PX789328Pseudoxanthomonas phage PT2266472064.858PseudoxanthomonasGroup I UnclassifiedUnclassifiedUnclassifiedUnclassifiedUnclassifiedCaudoviricetesUroviricotaHeunggongviraeDuplodnaviria Pseudoxanthomonas taiwanensis CB-226High-qualityHigh-quality95.310AAI-based (high-confidence) New_genusNew_speciesNo hits were found with the default settingslytic
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