INPHARED2

INPHARED2 is the new home of the INPHARED resource, providing a curated, regularly updated set of complete bacteriophage genomes with associated metadata and genome quality information, including CheckV assessments and taxonomy generated using taxMyPhage.

Building on the original database, INPHARED2 provides an expanded and improved reference resource for phage genomics; the updated resource and analysis are described in our INPHARED2 preprint. It provides an easy-to-use online search function alongside bulk data downloads.

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Create interactive summaries of genome metadata and download the resulting figures.

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Search INPHARED

Search by accession, description, host or taxonomy. The filters below reflect the initial INPHARED2 display specification.

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36350 matching reference genomes out of 36350. Search and filters are active; download will follow after the fields are finalised.

INPHARED2 search results

The results table contains the selected original taxonomy, CheckV, TaxMyPhage and PhageLeads fields. It can be scrolled horizontally for the full record.

Accession ▼	Description	Genome Length (bp)	molGC (%)	Host	Baltimore Group	Lowest Taxa	Genus	Sub-family	Family	Order	Class	Phylum	Kingdom	Realm	Isolation Host	CheckV quality	CheckV MIUVIG quality	CheckV completeness	CheckV completeness method	TaxMyPhage genus	TaxMyPhage species	TaxMyPhage message	PhageLeads lifestyle	PhageLeads problematic genes
PX093958	Mycobacterium phage Florence4	49095	60.745	Mycobacterium	Group I	Benedictvirus	Benedictvirus	Unclassified	Unclassified	Unclassified	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Mycobacterium smegmatis str. MC2 155	High-quality	High-quality	96.760	AAI-based (high-confidence)	Benedictvirus	Benedictvirus new_name	The number of expected genera is different from the predicted number of genus clusters. It will require more manual curation	temperate	integrase orf_27;immunity orf_61
PX093957	Mycobacterium phage Florence1	50030	60.704	Mycobacterium	Group I	Benedictvirus	Benedictvirus	Unclassified	Unclassified	Unclassified	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Mycobacterium smegmatis str. MC2 155	High-quality	High-quality	98.600	AAI-based (high-confidence)	Fromanvirus	Fromanvirus new_name	The number of expected genera is different from the predicted number of genus clusters. It will require more manual curation	temperate	integrase orf_27;immunity orf_61
PX093956	Mycobacterium phage Pisa4	55811	66.697	Mycobacterium	Group I	Anayavirus	Anayavirus	Weiservirinae	Unclassified	Unclassified	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Mycobacterium smegmatis str. MC2 155	High-quality	High-quality	91.160	AAI-based (high-confidence)	Anayavirus	Anayavirus new_name	The number of expected genera is different from the predicted number of genus clusters. It will require more manual curation	lytic
PX093955	Mycobacterium phage Pisa1	60442	66.651	Mycobacterium	Group I	Anayavirus	Anayavirus	Weiservirinae	Unclassified	Unclassified	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Mycobacterium smegmatis str. MC2 155	High-quality	High-quality	98.870	AAI-based (high-confidence)	Anayavirus	Anayavirus new_name	The number of expected genera is different from the predicted number of genus clusters. It will require more manual curation	temperate	integrase orf_40;immunity orf_42
PX093954	Acinetobacter phage Leghorn	40525	39.351	Acinetobacter	Group I	Friunavirus	Friunavirus	Beijerinckvirinae	Autoscriptoviridae	Autographivirales	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Acinetobacter baumannii 1-NA	High-quality	High-quality	97.830	AAI-based (high-confidence)	Friunavirus	Friunavirus new_name	Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level	lytic
PX093639	Klebsiella phage Skif1059	74854	44.023	Klebsiella	Unclassified	Unclassified	Unclassified	Unclassified	Unclassified	Unclassified	Unclassified	Unclassified	Unclassified	Unclassified	Klebsiella pneumoniae	High-quality	High-quality	100.000	AAI-based (high-confidence)	Kaypoctavirus	Kaypoctavirus new_name	Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level	lytic
PX093072	Pseudomonas phage ADT6	43322	62.149	Pseudomonas	Unclassified	Unclassified	Unclassified	Unclassified	Unclassified	Unclassified	Unclassified	Unclassified	Unclassified	Unclassified	Pseudomonas aeruginosa (clinical isolate)	Complete	High-quality	100.000	DTR (high-confidence)	Phikmvvirus	Phikmvvirus new_name	Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level	lytic
PX093071	Pseudomonas phage ADT23	73104	53.420	Pseudomonas	Unclassified	Unclassified	Unclassified	Unclassified	Unclassified	Unclassified	Unclassified	Unclassified	Unclassified	Unclassified	Pseudomonas aeruginosa (clinical isolate)	Complete	High-quality	100.000	DTR (high-confidence)	Luzseptimavirus	Luzseptimavirus KPP21	Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level	lytic
PX093057	Acinetobacter phage vB_AbaM-MU1	167200	36.396	Acinetobacter	Unclassified	Unclassified	Unclassified	Unclassified	Unclassified	Unclassified	Unclassified	Unclassified	Unclassified	Unclassified	Acinetobacter baumannii M13	High-quality	High-quality	99.830	AAI-based (high-confidence)	Hadassahvirus	Hadassahvirus azbtza1	Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level	lytic
PX092659	Escherichia phage vB_EcoS-TPF103dw	113080	39.010	Escherichia	Unclassified	Unclassified	Unclassified	Unclassified	Unclassified	Unclassified	Unclassified	Unclassified	Unclassified	Unclassified	Escherichia coli	High-quality	High-quality	100.000	AAI-based (high-confidence)	Tequintavirus	Tequintavirus new_name	The number of expected genera is different from the predicted number of genus clusters. It will require more manual curation	lytic