INPHARED2
INPHARED2 is the new home of the INPHARED resource, providing a curated, regularly updated set of complete bacteriophage genomes with associated metadata and genome quality information, including CheckV assessments and taxonomy generated using taxMyPhage.
Building on the original database, INPHARED2 provides an expanded and improved reference resource for phage genomics; the updated resource and analysis are described in our INPHARED2 preprint. It provides an easy-to-use online search function alongside bulk data downloads. The online database was last updated on 03 October 2026
Explore INPHARED2 data visually
Create interactive summaries of genome metadata and download the resulting figures.
Search INPHARED
Search by accession, description, host or taxonomy. The filters below reflect the initial INPHARED2 display specification.
37654 matching reference genomes out of 37654. Search and filters are active; download will follow after the fields are finalised.
INPHARED2 search results
The results table contains the selected original taxonomy, CheckV, TaxMyPhage and PhageLeads fields. It can be scrolled horizontally for the full record.
| Accession ▼ | Description | Genome Length (bp) | molGC (%) | Host | Baltimore Group | Lowest Taxa | Genus | Sub-family | Family | Order | Class | Phylum | Kingdom | Realm | Isolation Host | CheckV quality | CheckV MIUVIG quality | CheckV completeness | CheckV completeness method | TaxMyPhage genus | TaxMyPhage species | TaxMyPhage message | PhageLeads lifestyle | PhageLeads problematic genes |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| MN988557 | Rhizobium phage RHph_Y52 | 69157 | 56.837 | Rhizobium | Group I | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Rhizobium phaseoli IE6794 | High-quality | High-quality | 99.620 | AAI-based (high-confidence) | New_genus | New_species | No hits were found with the default settings | lytic | |
| MN988556 | Rhizobium phage RHph_I1_23 | 43424 | 58.293 | Rhizobium | Group I | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Rhizobium phaseoli I1_23 | High-quality | High-quality | 100.000 | AAI-based (high-confidence) | New_genus | New_species | No hits were found with the default settings | lytic | |
| MN988555 | Rhizobium phage RHph_I1_6 | 77174 | 46.277 | Rhizobium | Group I | Cyamitesvirus | Cyamitesvirus | Demetervirinae | Schitoviridae | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Rhizobium phaseoli I1_6 | High-quality | High-quality | 99.340 | AAI-based (high-confidence) | Cyamitesvirus | Cyamitesvirus I16 | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | lytic | |
| MN988554 | Rhizobium phage RHph_I72 | 55716 | 58.768 | Rhizobium | Group I | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Rhizobium etli 343 | High-quality | High-quality | 100.000 | AAI-based (high-confidence) | New_genus | New_species | No hits were found with the default settings | lytic | |
| MN988553 | Rhizobium phage RHph_I34 | 154143 | 48.494 | Rhizobium | Group I | Trinifflemingvirus | Trinifflemingvirus | Staniewskivirinae | Pootjesviridae | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Rhizobium etli CFN42 | High-quality | High-quality | 99.450 | AAI-based (high-confidence) | Trinifflemingvirus | Trinifflemingvirus I19 | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | lytic | |
| MN988552 | Rhizobium phage RHph_I4 | 108441 | 58.500 | Rhizobium | Group I | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Rhizobium phaseoli N771 | High-quality | High-quality | 99.620 | AAI-based (high-confidence) | New_genus | New_species | No hits were found with the default settings | lytic | |
| MN988551 | Rhizobium phage RHph_N3_8 | 18277 | 50.665 | Rhizobium | Group I | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Rhizobium sp. N3_8 | High-quality | High-quality | 95.140 | AAI-based (medium-confidence) | New_genus | New_species | No hits were found with the default settings | lytic | |
| MN988550 | Rhizobium phage RHph_N39 | 4781 | 56.076 | Rhizobium | Group II | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Microviricetes | Phixviricota | Sangervirae | Floreoviria | Rhizobium phaseoli S20 | High-quality | High-quality | 100.000 | AAI-based (medium-confidence) | New_genus | New_species | No hits were found with the default settings | unknown | |
| MN988549 | Rhizobium phage RHph_Y2_17_2 | 54438 | 56.457 | Rhizobium | Group I | Kleczkowskavirus | Kleczkowskavirus | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Rhizobium etli Y2_17 | High-quality | High-quality | 100.000 | AAI-based (high-confidence) | Kleczkowskavirus | Kleczkowskavirus new_name | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | lytic | |
| MN988548 | Rhizobium phage RHph_Y2_17_1 | 117010 | 59.871 | Rhizobium | Group I | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Rhizobium etli Y2_17 | High-quality | High-quality | 100.000 | AAI-based (high-confidence) | New_genus | New_species | No hits were found with the default settings | temperate | integrase orf_6 |