INPHARED2

INPHARED2 is the new home of the INPHARED resource, providing a curated, regularly updated set of complete bacteriophage genomes with associated metadata and genome quality information, including CheckV assessments and taxonomy generated using taxMyPhage.

Building on the original database, INPHARED2 provides an expanded and improved reference resource for phage genomics; the updated resource and analysis are described in our INPHARED2 preprint. It provides an easy-to-use online search function alongside bulk data downloads. The online database was last updated on 03 October 2026

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Search by accession, description, host or taxonomy. The filters below reflect the initial INPHARED2 display specification.

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37654 matching reference genomes out of 37654. Search and filters are active; download will follow after the fields are finalised.

INPHARED2 search results

The results table contains the selected original taxonomy, CheckV, TaxMyPhage and PhageLeads fields. It can be scrolled horizontally for the full record.

Accession ▼	Description	Genome Length (bp)	molGC (%)	Host	Baltimore Group	Lowest Taxa	Genus	Sub-family	Family	Order	Class	Phylum	Kingdom	Realm	Isolation Host	CheckV quality	CheckV MIUVIG quality	CheckV completeness	CheckV completeness method	TaxMyPhage genus	TaxMyPhage species	TaxMyPhage message	PhageLeads lifestyle	PhageLeads problematic genes
MT380195	Klebsiella phage vB_Kpn_B01	113227	45.459	Klebsiella	Group I	Sugarlandvirus	Sugarlandvirus	Unclassified	Demerecviridae	Unclassified	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Klebsiella pneumoniae	Complete	High-quality	100.000	DTR (high-confidence)	Sugarlandvirus	Sugarlandvirus B01	Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level	lytic
MT375531	Pelagibacter phage Unn EXVC019P	41069	33.463	Pelagibacter	Group I	Unclassified	Unclassified	Unclassified	Unclassified	Autographivirales	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Candidatus Pelagibacter sp H2P3alpha	High-quality	High-quality	98.870	AAI-based (high-confidence)	Foussvirus	Foussvirus new_name	Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level	temperate	integrase orf_28
MT375530	Pelagibacter phage Ran EXVC014P	41529	34.138	Pelagibacter	Group I	Pelagivirus	Pelagivirus	Unclassified	Unclassified	Autographivirales	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Candidatus Pelagibacter sp H2P3alpha	High-quality	High-quality	99.100	AAI-based (high-confidence)	New_genus	New_species	Query is a new genus and species. You could try running again with if you larger distance	temperate	integrase orf_33
MT375529	Pelagibacter phage Kolga EXVC016S	48659	30.471	Pelagibacter	Group I	Unclassified	Unclassified	Unclassified	Unclassified	Unclassified	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Candidatus Pelagibacter sp H2P3alpha	High-quality	High-quality	100.000	AAI-based (high-confidence)	New_genus	New_species	No hits were found with the default settings	lytic
MT375528	Pelagibacter phage Jormungand EXVC012P	41529	34.138	Pelagibacter	Group I	Pelagivirus	Pelagivirus	Unclassified	Unclassified	Autographivirales	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Candidatus Pelagibacter sp H2P3alpha	High-quality	High-quality	99.110	AAI-based (high-confidence)	New_genus	New_species	Query is a new genus and species. You could try running again with if you larger distance	temperate	integrase orf_57
MT375527	Pelagibacter phage Hroenn EXVC015P	41069	33.463	Pelagibacter	Group I	Unclassified	Unclassified	Unclassified	Unclassified	Autographivirales	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Candidatus Pelagibacter sp H2P3alpha	High-quality	High-quality	98.910	AAI-based (high-confidence)	Foussvirus	Foussvirus new_name	Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level	temperate	integrase orf_23
MT375526	Pelagibacter phage Himinglaeva EXVC011P	41069	33.463	Pelagibacter	Group I	Unclassified	Unclassified	Unclassified	Unclassified	Autographivirales	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Candidatus Pelagibacter sp H2P3alpha	High-quality	High-quality	98.870	AAI-based (high-confidence)	Foussvirus	Foussvirus new_name	Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level	temperate	integrase orf_42
MT375525	Pelagibacter phage Greip EXVC021P	34916	31.533	Pelagibacter	Group I	Unclassified	Unclassified	Unclassified	Unclassified	Unclassified	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Candidatus Pelagibacter ubique HTCC1062	High-quality	High-quality	99.270	AAI-based (high-confidence)	New_genus	New_species	No hits were found with the default settings	lytic
MT375524	Pelagibacter phage Gjalp EXVC020P	37857	32.417	Pelagibacter	Group I	Fussvirus	Fussvirus	Unclassified	Unclassified	Autographivirales	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Candidatus Pelagibacter ubique HTCC1062	High-quality	High-quality	100.000	AAI-based (high-confidence)	Fussvirus	Fussvirus eyrgjafa	Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level	temperate	integrase orf_14
MT375523	Pelagibacter phage Eyrgjafa EXVC018P	38005	32.556	Pelagibacter	Group I	Fussvirus	Fussvirus	Unclassified	Unclassified	Autographivirales	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Candidatus Pelagibacter ubique HTCC1062	High-quality	High-quality	100.000	AAI-based (high-confidence)	Fussvirus	Fussvirus eyrgjafa	Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level	temperate	integrase orf_2