INPHARED2

INPHARED2 is the new home of the INPHARED resource, providing a curated, regularly updated set of complete bacteriophage genomes with associated metadata and genome quality information, including CheckV assessments and taxonomy generated using taxMyPhage.

Building on the original database, INPHARED2 provides an expanded and improved reference resource for phage genomics; the updated resource and analysis are described in our INPHARED2 preprint. It provides an easy-to-use online search function alongside bulk data downloads. The online database was last updated on 03 October 2026

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Search by accession, description, host or taxonomy. The filters below reflect the initial INPHARED2 display specification.

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37654 matching reference genomes out of 37654. Search and filters are active; download will follow after the fields are finalised.

INPHARED2 search results

The results table contains the selected original taxonomy, CheckV, TaxMyPhage and PhageLeads fields. It can be scrolled horizontally for the full record.

Accession ▼	Description	Genome Length (bp)	molGC (%)	Host	Baltimore Group	Lowest Taxa	Genus	Sub-family	Family	Order	Class	Phylum	Kingdom	Realm	Isolation Host	CheckV quality	CheckV MIUVIG quality	CheckV completeness	CheckV completeness method	TaxMyPhage genus	TaxMyPhage species	TaxMyPhage message	PhageLeads lifestyle	PhageLeads problematic genes
MT515755	Yersinia phage PYps47T	165778	35.458	Yersinia	Group I	Tequatrovirus	Tequatrovirus	Tevenvirinae	Straboviridae	Pantevenvirales	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Yersinia pseudotuberculosis	High-quality	High-quality	98.560	AAI-based (high-confidence)	Tequatrovirus	Tequatrovirus sf21	Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level	lytic
MT515754	Yersinia phage PYps35T	166974	35.397	Yersinia	Group I	Tequatrovirus	Tequatrovirus	Tevenvirinae	Straboviridae	Pantevenvirales	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Yersinia pseudotuberculosis	High-quality	High-quality	99.270	AAI-based (high-confidence)	Tequatrovirus	Tequatrovirus ecombl75	Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level	lytic
MT515753	Yersinia phage PYps32T	165733	35.457	Yersinia	Group I	Tequatrovirus	Tequatrovirus	Tevenvirinae	Straboviridae	Pantevenvirales	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Yersinia pseudotuberculosis	High-quality	High-quality	98.530	AAI-based (high-confidence)	Tequatrovirus	Tequatrovirus sf21	Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level	lytic
MT515752	Yersinia phage PYps15T	166925	35.360	Yersinia	Group I	Tequatrovirus	Tequatrovirus	Tevenvirinae	Straboviridae	Pantevenvirales	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Yersinia pseudotuberculosis	High-quality	High-quality	99.290	AAI-based (high-confidence)	Tequatrovirus	Tequatrovirus ecombl75	Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level	lytic
MT515751	Yersinia phage PYps11T	169490	35.406	Yersinia	Group I	Tequatrovirus	Tequatrovirus	Tevenvirinae	Straboviridae	Pantevenvirales	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Yersinia pseudotuberculosis	High-quality	High-quality	100.000	AAI-based (high-confidence)	Tequatrovirus	Tequatrovirus pyps2t	Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level	lytic
MT514532	Bacillus phage Bolokhovo	49683	41.900	Bacillus	Group I	Andromedavirus	Andromedavirus	Unclassified	Ehrlichviridae	Unclassified	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Bacillus pumilus	Complete	High-quality	100.000	DTR (high-confidence)	Andromedavirus	Andromedavirus bolokhovo	Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level	lytic
MT511058	Escherichia phage vB_EcoD_SU57	46150	43.961	Escherichia	Group I	Veterinaerplatzvirus	Veterinaerplatzvirus	Braunvirinae	Drexlerviridae	Unclassified	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Escherichia coli ECOR57	High-quality	High-quality	100.000	AAI-based (high-confidence)	Veterinaerplatzvirus	Veterinaerplatzvirus SU57	The number of expected genera is different from the predicted number of genus clusters. It will require more manual curation	lytic
MT501516	Vibrio phage vB_VpaP_MGD1	43290	49.522	Vibrio	Group I	Maculvirus	Maculvirus	Unclassified	Autoscriptoviridae	Autographivirales	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Vibrio parahaemolyticus SH06	Complete	High-quality	100.000	DTR (high-confidence)	Maculvirus	Maculvirus MGD1	Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level	lytic
MT500540	Listeria phage LP-HM00113468	40298	35.488	Listeria	Group I	Slepowronvirus	Slepowronvirus	Trabyvirinae	Unclassified	Unclassified	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Listeria monocytogenes HM00113468	High-quality	High-quality	95.990	AAI-based (high-confidence)	Slepowronvirus	Slepowronvirus LPHM00113468	The number of expected genera is different from the predicted number of genus clusters. It will require more manual curation	temperate	cro orf_38;integrase orf_41
MT500539	Salmonella virus STSR3	49503	45.369	Salmonella	Group I	Drexlerviridae	Unclassified	Unclassified	Drexlerviridae	Unclassified	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Salmonella enterica subsp. enterica serovar Typhi	High-quality	High-quality	100.000	AAI-based (high-confidence)	Jhansiroadvirus	Jhansiroadvirus new_name	Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level	temperate	integrase orf_60