Becky Mayer Centre for Phage Research
BMCPR PhageBank
INPHARED2

INPHARED2

INPHARED2 is the new home of the INPHARED resource, providing a curated, regularly updated set of complete bacteriophage genomes with associated metadata and genome quality information, including CheckV assessments and taxonomy generated using taxMyPhage.

Building on the original database, INPHARED2 provides an expanded and improved reference resource for phage genomics; the updated resource and analysis are described in our INPHARED2 preprint. It provides an easy-to-use online search function alongside bulk data downloads.

Search INPHARED

Search by accession, description, host or taxonomy. The filters below reflect the initial INPHARED2 display specification.

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36350 matching reference genomes out of 36350. Search and filters are active; download will follow after the fields are finalised.

INPHARED2 search results

The results table contains the selected original taxonomy, CheckV, TaxMyPhage and PhageLeads fields. It can be scrolled horizontally for the full record.

Accession ▼ Description Genome Length (bp) molGC (%) Host Baltimore Group Lowest Taxa Genus Sub-family Family Order Class Phylum Kingdom Realm Isolation Host CheckV quality CheckV MIUVIG quality CheckV completeness CheckV completeness method TaxMyPhage genus TaxMyPhage species TaxMyPhage message PhageLeads lifestyle PhageLeads problematic genes
PX124330Acinetobacter phage AbYst_31977140.150AcinetobacterUnclassified UnclassifiedUnclassifiedUnclassifiedUnclassifiedUnclassifiedUnclassifiedUnclassifiedUnclassifiedUnclassified Acinetobacter baumanniiLow-qualityGenome-fragment47.730AAI-based (high-confidence) New_genusNew_speciesQuery is a new genus and species. You could try running again with if you larger distancelytic
PX123773Salmonella phage vB_CECAV_0514363847.456SalmonellaGroup I ZindervirusZindervirusMolineuxvirinaeAutosignataviridaeAutographiviralesCaudoviricetesUroviricotaHeunggongviraeDuplodnaviria Salmonella enterica subsp. enterica serovar TyphimuriumHigh-qualityHigh-quality97.910AAI-based (high-confidence) ZindervirusZindervirus UAB78The number of expected genera is different from the predicted number of genus clusters. It will require more manual curationlytic
PX123545Escherichia phage vB_EcoP_SSK13950651.445EscherichiaUnclassified UnclassifiedUnclassifiedUnclassifiedUnclassifiedUnclassifiedUnclassifiedUnclassifiedUnclassifiedUnclassified Escherichia coli O111:H2High-qualityHigh-quality98.790AAI-based (high-confidence) KayfunavirusKayfunavirus new_nameThe number of expected genera is different from the predicted number of genus clusters. It will require more manual curationlytic
PX123324Acinetobacter phage Solidus8904632.633AcinetobacterGroup I UnclassifiedUnclassifiedUnclassifiedUnclassifiedUnclassifiedCaudoviricetesUroviricotaHeunggongviraeDuplodnaviria Acinetobacter baumannii B8300High-qualityHigh-quality94.980AAI-based (high-confidence) New_genusNew_speciesNo hits were found with the default settingslytic
PX123149Pseudomonas phage RG248457948.941PseudomonasUnclassified UnclassifiedUnclassifiedUnclassifiedUnclassifiedUnclassifiedUnclassifiedUnclassifiedUnclassifiedUnclassified Pseudomonas marginalis LPm33Medium-qualityGenome-fragment88.550AAI-based (high-confidence) New_genusNew_speciesQuery is a new genus and species. You could try running again with if you larger distancelytic
PX123008Escherichia phage DH234468254.293EscherichiaUnclassified UnclassifiedUnclassifiedUnclassifiedUnclassifiedUnclassifiedUnclassifiedUnclassifiedUnclassifiedUnclassified Escherichia coli Dh5-alphaHigh-qualityHigh-quality99.910AAI-based (high-confidence) DhillonvirusDhillonvirus new_nameCurrent ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus levellytic
PX122092Acinetobacter phage Artin10244237.923AcinetobacterUnclassified UnclassifiedUnclassifiedUnclassifiedUnclassifiedUnclassifiedUnclassifiedUnclassifiedUnclassifiedUnclassified Acinetobacter baumannii ATCC 19606High-qualityHigh-quality98.430AAI-based (high-confidence) WulsvirusWulsvirus new_nameCurrent ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus levellytic
PX121526Acinetobacter phage CR8210152232.344AcinetobacterUnclassified UnclassifiedUnclassifiedUnclassifiedUnclassifiedUnclassifiedUnclassifiedUnclassifiedUnclassifiedUnclassified Acinetobacter baumanniiCompleteHigh-quality100.000DTR (high-confidence) New_genusNew_speciesNo hits were found with the default settingslytic
PX121525Mycobacterium Phage Brookers5656961.164MycobacteriumUnclassified UnclassifiedUnclassifiedUnclassifiedUnclassifiedUnclassifiedUnclassifiedUnclassifiedUnclassifiedUnclassified Mycobacterium smegmatis str. MC2 155High-qualityHigh-quality98.130AAI-based (high-confidence) New_genusNew_speciesQuery is a new genus and species. You could try running again with if you larger distancetemperateimmunity orf_34;integrase orf_36;immunity orf_38;antirepressor orf_40
PX121524Arthrobacter phage KayMoney4304565.336ArthrobacterUnclassified UnclassifiedUnclassifiedUnclassifiedUnclassifiedUnclassifiedUnclassifiedUnclassifiedUnclassifiedUnclassified Arthrobacter globiformis B-2979High-qualityHigh-quality99.800AAI-based (high-confidence) BridgettevirusBridgettevirus new_nameCurrent ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus leveltemperateintegrase orf_35;integrase orf_38
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