INPHARED2

INPHARED2 is the new home of the INPHARED resource, providing a curated, regularly updated set of complete bacteriophage genomes with associated metadata and genome quality information, including CheckV assessments and taxonomy generated using taxMyPhage.

Building on the original database, INPHARED2 provides an expanded and improved reference resource for phage genomics; the updated resource and analysis are described in our INPHARED2 preprint. It provides an easy-to-use online search function alongside bulk data downloads. The online database was last updated on 03 October 2026

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Search by accession, description, host or taxonomy. The filters below reflect the initial INPHARED2 display specification.

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37654 matching reference genomes out of 37654. Search and filters are active; download will follow after the fields are finalised.

INPHARED2 search results

The results table contains the selected original taxonomy, CheckV, TaxMyPhage and PhageLeads fields. It can be scrolled horizontally for the full record.

Accession ▼	Description	Genome Length (bp)	molGC (%)	Host	Baltimore Group	Lowest Taxa	Genus	Sub-family	Family	Order	Class	Phylum	Kingdom	Realm	Isolation Host	CheckV quality	CheckV MIUVIG quality	CheckV completeness	CheckV completeness method	TaxMyPhage genus	TaxMyPhage species	TaxMyPhage message	PhageLeads lifestyle	PhageLeads problematic genes
MT647606	Pelagibacter phage Mosig EXVC030M	141461	33.008	Pelagibacter	Group I	Kyanoviridae	Unclassified	Unclassified	Kyanoviridae	Pantevenvirales	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Candidatus Pelagibacter ubique HTCC1062	High-quality	High-quality	100.000	AAI-based (high-confidence)	New_genus	New_species	No hits were found with the default settings	lytic
MT647605	Pelagibacter phage Lederberg EXVC029P	33623	33.126	Pelagibacter	Group I	Unclassified	Unclassified	Unclassified	Unclassified	Unclassified	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Candidatus Pelagibacter ubique HTCC1062	High-quality	High-quality	100.000	AAI-based (high-confidence)	New_genus	New_species	No hits were found with the default settings	lytic
MT639654	Mycobacterium phage Jerm2	53215	63.567	Mycobacterium	Group I	Fromanvirus	Fromanvirus	Unclassified	Unclassified	Unclassified	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Mycobacterium smegmatis str. MC2 155	High-quality	High-quality	100.000	AAI-based (high-confidence)	Fromanvirus	Fromanvirus new_name	The number of expected genera is different from the predicted number of genus clusters. It will require more manual curation	temperate	integrase orf_36;immunity orf_73
MT639653	Arthrobacter phage Elezi	43471	66.550	Arthrobacter	Group I	Yangvirus	Yangvirus	Unclassified	Casidaviridae	Unclassified	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Arthrobacter globiformis B-2979	High-quality	High-quality	99.880	AAI-based (high-confidence)	Yangvirus	Yangvirus elezi	Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level	temperate	integrase orf_48
MT639652	Mycobacterium phage MasterPo	67361	68.923	Mycobacterium	Group I	Rosebushvirus	Rosebushvirus	Bclasvirinae	Unclassified	Unclassified	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Mycobacterium smegmatis str. MC2 155	High-quality	High-quality	99.690	AAI-based (high-confidence)	Rosebushvirus	Rosebushvirus rosebush	Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level	lytic
MT639651	Gordonia phage Portcullis	58364	67.759	Gordonia	Group I	Wizardvirus	Wizardvirus	Frickvirinae	Stackebrandtviridae	Unclassified	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Gordonia terrae 3612	High-quality	High-quality	98.370	AAI-based (high-confidence)	Wizardvirus	Wizardvirus portcullis	The number of expected genera is different from the predicted number of genus clusters. It will require more manual curation	temperate	immunity orf_20;integrase orf_44;integrase orf_47
MT639650	Gordonia phage Ohgeesy	53473	66.267	Gordonia	Group I	Baxterfoxvirus	Baxterfoxvirus	Nymbaxtervirinae	Unclassified	Unclassified	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Gordonia terrae 3612	High-quality	High-quality	100.000	AAI-based (high-confidence)	Baxterfoxvirus	Baxterfoxvirus ohgeesy	The number of expected genera is different from the predicted number of genus clusters. It will require more manual curation	temperate	integrase orf_37
MT639649	Microbacterium phage Burritobowl	41417	66.516	Microbacterium	Group I	Dismasvirus	Dismasvirus	Unclassified	Unclassified	Unclassified	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Microbacterium foliorum NRRL B-24224 SEA	High-quality	High-quality	99.490	AAI-based (high-confidence)	New_genus	New_species	Query is a new genus and species. You could try running again with if you larger distance	lytic
MT639648	Mycobacterium phage Heath	69258	68.727	Mycobacterium	Group I	Coopervirus	Coopervirus	Bclasvirinae	Unclassified	Unclassified	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Mycobacterium smegmatis str. MC2 155	High-quality	High-quality	98.040	AAI-based (high-confidence)	Coopervirus	Coopervirus heath	Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level	lytic
MT639647	Microbacterium phage JRok	17382	68.749	Microbacterium	Group I	Paopuvirus	Paopuvirus	Pelczarvirinae	Orlajensenviridae	Unclassified	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Microbacterium foliorum NRRL B-24224 SEA	High-quality	High-quality	99.890	AAI-based (high-confidence)	Paopuvirus	Paopuvirus azizam	Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level	lytic