INPHARED2

INPHARED2 is the new home of the INPHARED resource, providing a curated, regularly updated set of complete bacteriophage genomes with associated metadata and genome quality information, including CheckV assessments and taxonomy generated using taxMyPhage.

Building on the original database, INPHARED2 provides an expanded and improved reference resource for phage genomics; the updated resource and analysis are described in our INPHARED2 preprint. It provides an easy-to-use online search function alongside bulk data downloads. The online database was last updated on 03 October 2026

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Search by accession, description, host or taxonomy. The filters below reflect the initial INPHARED2 display specification.

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37654 matching reference genomes out of 37654. Search and filters are active; download will follow after the fields are finalised.

INPHARED2 search results

The results table contains the selected original taxonomy, CheckV, TaxMyPhage and PhageLeads fields. It can be scrolled horizontally for the full record.

Accession ▼	Description	Genome Length (bp)	molGC (%)	Host	Baltimore Group	Lowest Taxa	Genus	Sub-family	Family	Order	Class	Phylum	Kingdom	Realm	Isolation Host	CheckV quality	CheckV MIUVIG quality	CheckV completeness	CheckV completeness method	TaxMyPhage genus	TaxMyPhage species	TaxMyPhage message	PhageLeads lifestyle	PhageLeads problematic genes
MT732437	Cellulophaga phage Ingeline_3	42624	32.240	Cellulophaga	Group I	Ingelinevirus	Ingelinevirus	Unclassified	Duneviridae	Unclassified	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Cellulophaga sp. HaHaR_3_176	High-quality	High-quality	100.000	AAI-based (high-confidence)	Ingelinevirus	Ingelinevirus ingeline	Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level	temperate	integrase orf_11
MT732436	Cellulophaga phage Ingeline_2	42624	32.240	Cellulophaga	Group I	Ingelinevirus	Ingelinevirus	Unclassified	Duneviridae	Unclassified	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Cellulophaga sp. HaHaR_3_176	High-quality	High-quality	100.000	AAI-based (high-confidence)	Ingelinevirus	Ingelinevirus ingeline	Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level	temperate	integrase orf_11
MT732435	Cellulophaga phage Ingeline_1	42624	32.240	Cellulophaga	Group I	Ingelinevirus	Ingelinevirus	Unclassified	Duneviridae	Unclassified	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Cellulophaga sp. HaHaR_3_176	High-quality	High-quality	100.000	AAI-based (high-confidence)	Ingelinevirus	Ingelinevirus ingeline	Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level	temperate	integrase orf_11
MT732434	Cellulophaga phage Calle_3	72980	38.112	Cellulophaga	Group I	Callevirus	Callevirus	Unclassified	Pervagoviridae	Unclassified	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Cellulophaga sp. HaHa_2_95	High-quality	High-quality	100.000	AAI-based (high-confidence)	Callevirus	Callevirus Calle	Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level	temperate	integrase orf_27
MT732433	Cellulophaga phage Calle_2	72979	38.107	Cellulophaga	Group I	Callevirus	Callevirus	Unclassified	Pervagoviridae	Unclassified	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Cellulophaga sp. HaHa_2_95	High-quality	High-quality	100.000	AAI-based (high-confidence)	Callevirus	Callevirus Calle	Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level	temperate	integrase orf_27
MT732432	Cellulophaga phage Calle_1	72979	38.108	Cellulophaga	Group I	Callevirus	Callevirus	Unclassified	Pervagoviridae	Unclassified	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Cellulophaga sp. HaHa_2_95	High-quality	High-quality	100.000	AAI-based (high-confidence)	Callevirus	Callevirus Calle	Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level	temperate	integrase orf_27
MT724048	Staphylococcus phage SAP3	41949	35.355	Staphylococcus	Group I	Rockefellervirus	Rockefellervirus	Unclassified	Unclassified	Unclassified	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Staphylococcus aureus D085	High-quality	High-quality	100.000	AAI-based (high-confidence)	New_genus	New_species	No hits were found with the default settings	temperate	integrase orf_46;antirepressor orf_51
MT723945	Mycobacterium phage Quasimodo	156354	64.624	Mycobacterium	Group I	Bixzunavirus	Bixzunavirus	Ceeclamvirinae	Unclassified	Unclassified	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Mycobacterium smegmatis str. MC2 155	High-quality	High-quality	98.000	AAI-based (high-confidence)	Bixzunavirus	Bixzunavirus quasimodo	Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level	lytic
MT723944	Mycobacterium phage ChaylaJr	154973	64.642	Mycobacterium	Group I	Bixzunavirus	Bixzunavirus	Ceeclamvirinae	Unclassified	Unclassified	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Mycobacterium smegmatis str. MC2 155	High-quality	High-quality	97.140	AAI-based (high-confidence)	Bixzunavirus	Bixzunavirus quasimodo	Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level	lytic
MT723943	Mycobacterium phage Cactus	75603	63.012	Mycobacterium	Group I	Kostyavirus	Kostyavirus	Unclassified	Unclassified	Unclassified	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Mycobacterium smegmatis str. MC2 155	High-quality	High-quality	99.340	AAI-based (high-confidence)	Kostyavirus	Kostyavirus new_name	Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level	temperate	integrase orf_53;immunity orf_56