INPHARED2
INPHARED2
INPHARED2 is the new home of the INPHARED resource, providing a curated, regularly updated set of complete bacteriophage genomes with associated metadata and genome quality information, including CheckV assessments and taxonomy generated using taxMyPhage.
Building on the original database, INPHARED2 provides an expanded and improved reference resource for phage genomics; the updated resource and analysis are described in our INPHARED2 preprint. It provides an easy-to-use online search function alongside bulk data downloads. The online database was last updated on 03 October 2026
Explore INPHARED2 data visually
Create interactive summaries of genome metadata and download the resulting figures.
Search INPHARED
Search by accession, description, host or taxonomy. The filters below reflect the initial INPHARED2 display specification.
37654 matching reference genomes out of 37654. Search and filters are active; download will follow after the fields are finalised.
INPHARED2 search results
The results table contains the selected original taxonomy, CheckV, TaxMyPhage and PhageLeads fields. It can be scrolled horizontally for the full record.
| Accession ▼ | Description | Genome Length (bp) | molGC (%) | Host | Baltimore Group | Lowest Taxa | Genus | Sub-family | Family | Order | Class | Phylum | Kingdom | Realm | Isolation Host | CheckV quality | CheckV MIUVIG quality | CheckV completeness | CheckV completeness method | TaxMyPhage genus | TaxMyPhage species | TaxMyPhage message | PhageLeads lifestyle | PhageLeads problematic genes |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| MT740730 | Ralstonia phage Cimandef | 55171 | 64.822 | Ralstonia | Group I | Cimandefvirus | Cimandefvirus | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Ralstonia pseudosolanacearum I-31 (MT043) | High-quality | High-quality | 93.610 | AAI-based (high-confidence) | Cimandefvirus | Cimandefvirus cimandef | The number of expected genera is different from the predicted number of genus clusters. It will require more manual curation | lytic | |
| MT740729 | Ralstonia phage Bakoly | 44222 | 62.324 | Ralstonia | Group I | Bakolyvirus | Bakolyvirus | Mascarenevirinae | Anamaviridae | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Ralstonia pseudosolanacearum I-33 (MT009) | Complete | High-quality | 100.000 | DTR (high-confidence) | Bakolyvirus | Bakolyvirus bakoly | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | lytic | |
| MT740728 | Ralstonia phage Anchaing | 43597 | 63.087 | Ralstonia | Group I | Anchaingvirus | Anchaingvirus | Unclassified | Autonotataviridae | Autographivirales | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Ralstonia pseudosolanacearum I-31 (MT043) | Complete | High-quality | 100.000 | DTR (high-confidence) | Anchaingvirus | Anchaingvirus anchaing | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | temperate | integrase orf_10 |
| MT740727 | Ralstonia phage Alix | 57681 | 64.318 | Ralstonia | Group I | Gervaisevirus | Gervaisevirus | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Ralstonia pseudosolanacearum I-15 (MT014) | Complete | High-quality | 100.000 | DTR (high-confidence) | Gervaisevirus | Gervaisevirus new_name | The number of expected genera is different from the predicted number of genus clusters. It will require more manual curation | lytic | |
| MT740726 | Ralstonia phage Albius | 46541 | 60.624 | Ralstonia | Group I | Rahariannevirus | Rahariannevirus | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Ralstonia pseudosolanacearum I-31 (MT043) | Complete | High-quality | 100.000 | DTR (high-confidence) | Rahariannevirus | Rahariannevirus raharianne | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | lytic | |
| MT740725 | Ralstonia phage Adzire | 44732 | 62.228 | Ralstonia | Group I | Bakolyvirus | Bakolyvirus | Mascarenevirinae | Anamaviridae | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Ralstonia pseudosolanacearum I-31 (MT043) | High-quality | High-quality | 100.000 | AAI-based (high-confidence) | Bakolyvirus | Bakolyvirus adzire | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | lytic | |
| MT740315 | Escherichia phage JEP4 | 39195 | 47.054 | Escherichia | Group I | Lederbergvirus | Lederbergvirus | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Escherichia coli | High-quality | High-quality | 100.000 | AAI-based (high-confidence) | New_genus | New_species | Query is a new genus and species. You could try running again with if you larger distance | temperate | integrase orf_22;cro orf_37;antirepressor orf_55 |
| MT740314 | Escherichia phage JEP1 | 143610 | 43.538 | Escherichia | Group I | Vequintavirus | Vequintavirus | Vequintavirinae | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Escherichia coli | High-quality | High-quality | 100.000 | AAI-based (high-confidence) | Vequintavirus | Vequintavirus JEP1 | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | lytic | |
| MT740307 | Pseudomonas phage phiK7A1 | 98780 | 48.790 | Pseudomonas | Group I | Torinovirus | Torinovirus | Gorskivirinae | Vandenendeviridae | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Pseudomonas syringae pv. actinidiae K7A1 | High-quality | High-quality | 100.000 | AAI-based (high-confidence) | Torinovirus | Torinovirus K7A1 | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | lytic | |
| MT740291 | Salmonella phage SHWT1 | 40629 | 49.831 | Salmonella | Group I | Jerseyvirus | Jerseyvirus | Guernseyvirinae | Sarkviridae | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Salmonella sp. | High-quality | High-quality | 94.890 | AAI-based (high-confidence) | Jerseyvirus | Jerseyvirus SHWT1 | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | lytic |