INPHARED2

INPHARED2 is the new home of the INPHARED resource, providing a curated, regularly updated set of complete bacteriophage genomes with associated metadata and genome quality information, including CheckV assessments and taxonomy generated using taxMyPhage.

Building on the original database, INPHARED2 provides an expanded and improved reference resource for phage genomics; the updated resource and analysis are described in our INPHARED2 preprint. It provides an easy-to-use online search function alongside bulk data downloads. The online database was last updated on 03 October 2026

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Search by accession, description, host or taxonomy. The filters below reflect the initial INPHARED2 display specification.

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37654 matching reference genomes out of 37654. Search and filters are active; download will follow after the fields are finalised.

INPHARED2 search results

The results table contains the selected original taxonomy, CheckV, TaxMyPhage and PhageLeads fields. It can be scrolled horizontally for the full record.

Accession ▼	Description	Genome Length (bp)	molGC (%)	Host	Baltimore Group	Lowest Taxa	Genus	Sub-family	Family	Order	Class	Phylum	Kingdom	Realm	Isolation Host	CheckV quality	CheckV MIUVIG quality	CheckV completeness	CheckV completeness method	TaxMyPhage genus	TaxMyPhage species	TaxMyPhage message	PhageLeads lifestyle	PhageLeads problematic genes
MT764206	Escherichia phage JEP6	170340	35.311	Escherichia	Group I	Tequatrovirus	Tequatrovirus	Tevenvirinae	Straboviridae	Pantevenvirales	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Escherichia coli	High-quality	High-quality	100.000	AAI-based (high-confidence)	Tequatrovirus	Tequatrovirus new_name	Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level	lytic
MT758689	Lactobacillus phage Lbab1	140488	37.351	Lactobacillus	Group I	Mooreparkvirus	Mooreparkvirus	Unclassified	Herelleviridae	Unclassified	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Lactobacillus casei BL23	High-quality	High-quality	99.490	AAI-based (high-confidence)	Mooreparkvirus	Mooreparkvirus new_name	Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level	lytic
MT758688	Mycobacterium phage CELFI	77086	59.033	Mycobacterium	Group I	Faithunavirus	Faithunavirus	Lclasvirinae	Vilmaviridae	Unclassified	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Mycobacterium smegmatis str. MC2 155	High-quality	High-quality	100.000	AAI-based (high-confidence)	Faithunavirus	Faithunavirus CELFI	Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level	temperate	integrase orf_39;immunity orf_41
MT757399	Enterococcus phage AE4_17	18477	32.879	Enterococcus	Group I	Copernicusvirus	Copernicusvirus	Sarlesvirinae	Rountreeviridae	Unclassified	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Enterococcus faecalis ZEF2	High-quality	High-quality	100.000	AAI-based (high-confidence)	Copernicusvirus	Copernicusvirus AE417	Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level	lytic
MT757392	Klebsiella phage vB_KleM_KB2	48245	48.888	Klebsiella	Group I	Bimevirus	Bimevirus	Jameshumphriesvirinae	Unclassified	Unclassified	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Klebsiella pneumoniae 0915	High-quality	High-quality	99.370	AAI-based (high-confidence)	Bimevirus	Bimevirus KB2	The number of expected genera is different from the predicted number of genus clusters. It will require more manual curation	lytic
MT747435	Enterococcus phage AE4_2	37561	37.621	Enterococcus	Group I	Unclassified	Unclassified	Unclassified	Unclassified	Unclassified	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Enterococcus faecalis	High-quality	High-quality	99.220	AAI-based (high-confidence)	New_genus	New_species	Query is a new genus and species. You could try running again with if you larger distance	temperate	integrase orf_1;cro orf_4;cro orf_5
MT747434	Enterococcus phage ZEF1	18454	32.860	Enterococcus	Group I	Copernicusvirus	Copernicusvirus	Sarlesvirinae	Rountreeviridae	Unclassified	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Enterococcus faecalis	High-quality	High-quality	100.000	AAI-based (high-confidence)	Copernicusvirus	Copernicusvirus AE417	Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level	lytic
MT745956	Bacillus phage z1a	39399	35.062	Bacillus	Group I	Wbetavirus	Wbetavirus	Unclassified	Unclassified	Unclassified	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Bacillus anthracis	High-quality	High-quality	99.400	AAI-based (high-confidence)	Wbetavirus	Wbetavirus z1a	Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level	temperate	integrase orf_28
MT745955	Bacillus phage J5a	40353	35.207	Bacillus	Group I	Wbetavirus	Wbetavirus	Unclassified	Unclassified	Unclassified	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Bacillus anthracis	High-quality	High-quality	100.000	AAI-based (high-confidence)	Wbetavirus	Wbetavirus J5a	Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level	temperate	integrase orf_28
MT745954	Bacillus phage F16Ba	38554	34.878	Bacillus	Group I	Wbetavirus	Wbetavirus	Unclassified	Unclassified	Unclassified	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Bacillus anthracis	High-quality	High-quality	97.320	AAI-based (high-confidence)	Wbetavirus	Wbetavirus F16Ba	Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level	temperate	integrase orf_28