Becky Mayer Centre for Phage Research
BMCPR PhageBank
INPHARED2

INPHARED2

INPHARED2 is the new home of the INPHARED resource, providing a curated, regularly updated set of complete bacteriophage genomes with associated metadata and genome quality information, including CheckV assessments and taxonomy generated using taxMyPhage.

Building on the original database, INPHARED2 provides an expanded and improved reference resource for phage genomics; the updated resource and analysis are described in our INPHARED2 preprint. It provides an easy-to-use online search function alongside bulk data downloads. The online database was last updated on 03 October 2026

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Search by accession, description, host or taxonomy. The filters below reflect the initial INPHARED2 display specification.

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37654 matching reference genomes out of 37654. Search and filters are active; download will follow after the fields are finalised.

INPHARED2 search results

The results table contains the selected original taxonomy, CheckV, TaxMyPhage and PhageLeads fields. It can be scrolled horizontally for the full record.

Accession ▼ Description Genome Length (bp) molGC (%) Host Baltimore Group Lowest Taxa Genus Sub-family Family Order Class Phylum Kingdom Realm Isolation Host CheckV quality CheckV MIUVIG quality CheckV completeness CheckV completeness method TaxMyPhage genus TaxMyPhage species TaxMyPhage message PhageLeads lifestyle PhageLeads problematic genes
MT857001Enterococcus phage EFA-14045434.812EnterococcusGroup I KayfunavirusKayfunavirusStudiervirinaeAutotranscriptaviridaeAutographiviralesCaudoviricetesUroviricotaHeunggongviraeDuplodnaviria Enterococcus faecalisHigh-qualityHigh-quality99.310AAI-based (high-confidence) EfquatrovirusEfquatrovirus new_nameCurrent ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus levellytic
MT856905Enterococcus phage vB_EfaM_A214943137.061EnterococcusGroup I SchiekvirusSchiekvirusBrockvirinaeHerelleviridaeUnclassifiedCaudoviricetesUroviricotaHeunggongviraeDuplodnaviria Enterococcus faecalis OG1RFCompleteHigh-quality100.000DTR (high-confidence) SchiekvirusSchiekvirus A2Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus levellytic
MT855965Microcystis phage vB_MaeS-yong14366566.735MicrocystisGroup I UnclassifiedUnclassifiedUnclassifiedUnclassifiedUnclassifiedCaudoviricetesUroviricotaHeunggongviraeDuplodnaviria Microcystis aeruginosaHigh-qualityHigh-quality100.000AAI-based (high-confidence) New_genusNew_speciesNo hits were found with the default settingstemperateintegrase orf_4;integrase orf_35
MT843276Serratia phage vB_SspS_OS314228051.154SerratiaGroup I HendrixvirinaeUnclassifiedHendrixvirinaeUnclassifiedUnclassifiedCaudoviricetesUroviricotaHeunggongviraeDuplodnaviria Serratia sp. OS31High-qualityHigh-quality100.000AAI-based (high-confidence) New_genusNew_speciesNo hits were found with the default settingslytic
MT843275Serratia phage vB_SspM_BZS14499551.590SerratiaGroup I UnclassifiedUnclassifiedUnclassifiedUnclassifiedUnclassifiedCaudoviricetesUroviricotaHeunggongviraeDuplodnaviria Serratia sp. OS31High-qualityHigh-quality100.000AAI-based (high-confidence) New_genusNew_speciesNo hits were found with the default settingstemperateintegrase orf_29
MT843274Escherichia phage BB111009938.932EscherichiaGroup I TequintavirusTequintavirusMarkadamsvirinaeDemerecviridaeUnclassifiedCaudoviricetesUroviricotaHeunggongviraeDuplodnaviria UnspecifiedCompleteHigh-quality100.000DTR (high-confidence) TequintavirusTequintavirus BB1The number of expected genera is different from the predicted number of genus clusters. It will require more manual curationlytic
MT833387Escherichia phage HF4s3939047.469EscherichiaGroup I LederbergvirusLederbergvirusUnclassifiedUnclassifiedUnclassifiedCaudoviricetesUroviricotaHeunggongviraeDuplodnaviria Escherichia coli 4sHigh-qualityHigh-quality97.900AAI-based (high-confidence) New_genusNew_speciesQuery is a new genus and species. You could try running again with if you larger distancetemperateintegrase orf_19;cro orf_38;antirepressor orf_39
MT833283Escherichia coli phage vB_EcoS_Ace11279139.962EscherichiaGroup I EpseptimavirusEpseptimavirusMarkadamsvirinaeDemerecviridaeUnclassifiedCaudoviricetesUroviricotaHeunggongviraeDuplodnaviria Escherichia coli CECT 5947High-qualityHigh-quality99.710AAI-based (high-confidence) EpseptimavirusEpseptimavirus aceThe number of expected genera is different from the predicted number of genus clusters. It will require more manual curationlytic
MT833282Escherichia coli phage vB_EcoM_Shy8876038.994EscherichiaGroup I FelixounavirusFelixounavirusOunavirinaeAndersonviridaeUnclassifiedCaudoviricetesUroviricotaHeunggongviraeDuplodnaviria Escherichia coli NCTC 12900High-qualityHigh-quality100.000AAI-based (high-confidence) FelixounavirusFelixounavirus shyCurrent ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus levellytic
MT830620Escherichia phage MS2356952.059EscherichiaGroup IV EmesvirusEmesvirusUnclassifiedFiersviridaeNorziviralesLeviviricetesLenarviricotaOrthornaviraeRiboviria Escherichia coli ATCC 700891High-qualityHigh-quality100.000AAI-based (high-confidence) New_genusNew_speciesNo hits were found with the default settingsunknown
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