Becky Mayer Centre for Phage Research
BMCPR PhageBank
INPHARED2

INPHARED2

INPHARED2 is the new home of the INPHARED resource, providing a curated, regularly updated set of complete bacteriophage genomes with associated metadata and genome quality information, including CheckV assessments and taxonomy generated using taxMyPhage.

Building on the original database, INPHARED2 provides an expanded and improved reference resource for phage genomics; the updated resource and analysis are described in our INPHARED2 preprint. It provides an easy-to-use online search function alongside bulk data downloads. The online database was last updated on 03 October 2026

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Search by accession, description, host or taxonomy. The filters below reflect the initial INPHARED2 display specification.

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37654 matching reference genomes out of 37654. Search and filters are active; download will follow after the fields are finalised.

INPHARED2 search results

The results table contains the selected original taxonomy, CheckV, TaxMyPhage and PhageLeads fields. It can be scrolled horizontally for the full record.

Accession ▼ Description Genome Length (bp) molGC (%) Host Baltimore Group Lowest Taxa Genus Sub-family Family Order Class Phylum Kingdom Realm Isolation Host CheckV quality CheckV MIUVIG quality CheckV completeness CheckV completeness method TaxMyPhage genus TaxMyPhage species TaxMyPhage message PhageLeads lifestyle PhageLeads problematic genes
MT901798Erwinia phage PEar2665141.693ErwiniaGroup II InoviridaeUnclassifiedUnclassifiedInoviridaeTubulaviralesFaserviricetesHofneiviricotaLoebviraeFloreoviria Erwinia amylovora Ea1High-qualityHigh-quality97.510AAI-based (high-confidence) New_genusNew_speciesNo hits were found with the default settingsunknown
MT901797Erwinia phage PEar1664641.679ErwiniaGroup II InoviridaeUnclassifiedUnclassifiedInoviridaeTubulaviralesFaserviricetesHofneiviricotaLoebviraeFloreoviria Erwinia amylovora strain Ea1High-qualityHigh-quality97.440AAI-based (high-confidence) New_genusNew_speciesNo hits were found with the default settingsunknown
MT900488Streptococcus phage SA013608837.536StreptococcusGroup I AliceevansviridaeUnclassifiedUnclassifiedAliceevansviridaeUnclassifiedCaudoviricetesUroviricotaHeunggongviraeDuplodnaviria Streptococcus anginosus SA01High-qualityHigh-quality97.170AAI-based (high-confidence) New_genusNew_speciesQuery is a new genus and species. You could try running again with if you larger distancelytic
MT900487Streptococcus phage 23TH3227239.774StreptococcusGroup I PhadecavirusPhadecavirusMcshanvirinaeUnclassifiedUnclassifiedCaudoviricetesUroviricotaHeunggongviraeDuplodnaviria Streptococcus infantis 23THHigh-qualityHigh-quality100.000AAI-based (high-confidence) PhadecavirusPhadecavirus pv23THThe number of expected genera is different from the predicted number of genus clusters. It will require more manual curationtemperateintegrase orf_1;cro orf_4;antirepressor orf_11;integrase orf_26
MT899504Staphylococcus phage JD4194550933.536StaphylococcusGroup I TriavirusTriavirusUnclassifiedUnclassifiedUnclassifiedCaudoviricetesUroviricotaHeunggongviraeDuplodnaviria Staphylococcus aureusHigh-qualityHigh-quality97.850AAI-based (high-confidence) TriavirusTriavirus new_nameThe number of expected genera is different from the predicted number of genus clusters. It will require more manual curationtemperateintegrase orf_21;antirepressor orf_46;cro orf_48;integrase orf_53
MT899444Liberibacter phage P-PA19-13760140.901LiberibacterGroup I UnclassifiedUnclassifiedUnclassifiedUnclassifiedUnclassifiedCaudoviricetesUroviricotaHeunggongviraeDuplodnaviria Candidatus Liberibacter asiaticusHigh-qualityHigh-quality97.460AAI-based (high-confidence) New_genusNew_speciesNo hits were found with the default settingstemperateantirepressor orf_32
MT899443Liberibacter phage P-PA19-23150538.886LiberibacterGroup I UnclassifiedUnclassifiedUnclassifiedUnclassifiedUnclassifiedCaudoviricetesUroviricotaHeunggongviraeDuplodnaviria Candidatus Liberibacter asisticusMedium-qualityGenome-fragment80.790AAI-based (high-confidence) New_genusNew_speciesNo hits were found with the default settingstemperateantirepressor orf_23
MT897910Mycobacterium phage VioletZ7129468.916MycobacteriumGroup I CoopervirusCoopervirusBclasvirinaeUnclassifiedUnclassifiedCaudoviricetesUroviricotaHeunggongviraeDuplodnaviria Mycobacterium smegmatis str. MC2 155High-qualityHigh-quality100.000AAI-based (high-confidence) CoopervirusCoopervirus new_nameCurrent ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus levellytic
MT897909Mycobacterium phage Maru6868466.438MycobacteriumGroup I PegunavirusPegunavirusBclasvirinaeUnclassifiedUnclassifiedCaudoviricetesUroviricotaHeunggongviraeDuplodnaviria Mycobacterium smegmatis str. MC2 155High-qualityHigh-quality98.860AAI-based (high-confidence) PegunavirusPegunavirus sotoCurrent ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus levellytic
MT897908Streptomyces phage ShakeNBake6929964.236StreptomycesGroup I UnclassifiedUnclassifiedUnclassifiedUnclassifiedUnclassifiedCaudoviricetesUroviricotaHeunggongviraeDuplodnaviria Streptomyces viridochromogenes DSM40736High-qualityHigh-quality100.000AAI-based (high-confidence) New_genusNew_speciesNo hits were found with the default settingslytic
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