INPHARED2
INPHARED2 is the new home of the INPHARED resource, providing a curated, regularly updated set of complete bacteriophage genomes with associated metadata and genome quality information, including CheckV assessments and taxonomy generated using taxMyPhage.
Building on the original database, INPHARED2 provides an expanded and improved reference resource for phage genomics; the updated resource and analysis are described in our INPHARED2 preprint. It provides an easy-to-use online search function alongside bulk data downloads. The online database was last updated on 03 October 2026
Explore INPHARED2 data visually
Create interactive summaries of genome metadata and download the resulting figures.
Search INPHARED
Search by accession, description, host or taxonomy. The filters below reflect the initial INPHARED2 display specification.
37654 matching reference genomes out of 37654. Search and filters are active; download will follow after the fields are finalised.
INPHARED2 search results
The results table contains the selected original taxonomy, CheckV, TaxMyPhage and PhageLeads fields. It can be scrolled horizontally for the full record.
| Accession ▼ | Description | Genome Length (bp) | molGC (%) | Host | Baltimore Group | Lowest Taxa | Genus | Sub-family | Family | Order | Class | Phylum | Kingdom | Realm | Isolation Host | CheckV quality | CheckV MIUVIG quality | CheckV completeness | CheckV completeness method | TaxMyPhage genus | TaxMyPhage species | TaxMyPhage message | PhageLeads lifestyle | PhageLeads problematic genes |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| MT952161 | Serratia phage vB_SmaS-Smarc6 | 59531 | 56.508 | Serratia | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Serratia marcescens | High-quality | High-quality | 92.000 | AAI-based (high-confidence) | Chivirus | Chivirus new_name | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | temperate | integrase orf_58 |
| MT952160 | Serratia phage vB_SmaS-Smarc1 | 58021 | 56.600 | Serratia | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Serratia marcescens 5429 | High-quality | High-quality | 99.060 | AAI-based (high-confidence) | New_genus | New_species | Query is a new genus and species. You could try running again with if you larger distance | lytic | |
| MT952005 | Aeromonas phage BUCT551 | 61382 | 61.710 | Aeromonas | Group I | Sharonstreetvirus | Sharonstreetvirus | Unclassified | Casjensviridae | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Unspecified | High-quality | High-quality | 100.000 | AAI-based (high-confidence) | Sharonstreetvirus | Sharonstreetvirus BUCT551 | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | lytic | |
| MT951623 | Escherichia phage vB_EcoS_bov15_1 | 44700 | 54.485 | Escherichia | Group I | Dhillonvirus | Dhillonvirus | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Escherichia coli | High-quality | High-quality | 99.950 | AAI-based (high-confidence) | Dhillonvirus | Dhillonvirus bov221 | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | lytic | |
| MT951568 | Xanthomonas phage Xaa_vB_phi31 | 42825 | 60.371 | Xanthomonas | Group I | Pazvirus | Pazvirus | Gujervirinae | Autonotataviridae | Autographivirales | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Xanthomonas euvesicatoria pv. allii XaaBL11 | High-quality | High-quality | 99.670 | AAI-based (high-confidence) | Pazvirus | Pazvirus 31 | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | lytic | |
| MT949699 | Acinetobacter phage Maestro | 169176 | 36.331 | Acinetobacter | Group I | Hadassahvirus | Hadassahvirus | Twarogvirinae | Straboviridae | Pantevenvirales | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Acinetobacter baumannii strain TP1 | High-quality | High-quality | 100.000 | AAI-based (high-confidence) | Hadassahvirus | Hadassahvirus new_name | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | lytic | |
| MT947439 | Protaetiibacter phage SSC1 | 5386 | 44.709 | Protaetiibacterium | Group II | Sinsheimervirus | Sinsheimervirus | Unclassified | Eubullaviridae | Bullavirales | Microviricetes | Phixviricota | Sangervirae | Floreoviria | Unspecified | High-quality | High-quality | 91.690 | AAI-based (high-confidence) | New_genus | New_species | No hits were found with the default settings | unknown | |
| MT944117 | Escherichia phage PNJ1809-36 | 152343 | 39.106 | Escherichia | Group I | Phapecoctavirus | Phapecoctavirus | Stephanstirmvirinae | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Escherichia coli | High-quality | High-quality | 100.000 | AAI-based (high-confidence) | Phapecoctavirus | Phapecoctavirus phAPEC8 | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | lytic | |
| MT941682 | Pseudomonas phage BUCT553 | 47148 | 56.605 | Pseudomonas | Group I | Nerthusvirus | Nerthusvirus | Colwellvirinae | Autosignataviridae | Autographivirales | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Pseudomonas syringae pv. actinidiae | High-quality | High-quality | 100.000 | AAI-based (high-confidence) | Nerthusvirus | Nerthusvirus BUCT553 | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | lytic | |
| MT939492 | Xanthomonas phage Xoo-sp14 | 232104 | 58.013 | Xanthomonas | Group I | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Xanthomonas oryzae pv. oryzae | High-quality | High-quality | 100.000 | AAI-based (high-confidence) | New_genus | New_species | No hits were found with the default settings | lytic |