INPHARED2

INPHARED2 is the new home of the INPHARED resource, providing a curated, regularly updated set of complete bacteriophage genomes with associated metadata and genome quality information, including CheckV assessments and taxonomy generated using taxMyPhage.

Building on the original database, INPHARED2 provides an expanded and improved reference resource for phage genomics; the updated resource and analysis are described in our INPHARED2 preprint. It provides an easy-to-use online search function alongside bulk data downloads. The online database was last updated on 03 October 2026

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Search by accession, description, host or taxonomy. The filters below reflect the initial INPHARED2 display specification.

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37654 matching reference genomes out of 37654. Search and filters are active; download will follow after the fields are finalised.

INPHARED2 search results

The results table contains the selected original taxonomy, CheckV, TaxMyPhage and PhageLeads fields. It can be scrolled horizontally for the full record.

Accession ▼	Description	Genome Length (bp)	molGC (%)	Host	Baltimore Group	Lowest Taxa	Genus	Sub-family	Family	Order	Class	Phylum	Kingdom	Realm	Isolation Host	CheckV quality	CheckV MIUVIG quality	CheckV completeness	CheckV completeness method	TaxMyPhage genus	TaxMyPhage species	TaxMyPhage message	PhageLeads lifestyle	PhageLeads problematic genes
MW248466	Staphylococcus phage MarsHill	266637	25.178	Staphylococcus	Group I	Madawaskavirus	Madawaskavirus	Wallmarkvirinae	Unclassified	Unclassified	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Staphylococcus aureus	High-quality	High-quality	100.000	AAI-based (high-confidence)	Madawaskavirus	Madawaskavirus marshill	Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level	lytic
MW247147	Helicobacter phage COL 23-PUJ	28622	37.293	Helicobacter	Group I	Schmidvirus	Schmidvirus	Unclassified	Unclassified	Unclassified	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Helicobacter pylori	High-quality	High-quality	100.000	AAI-based (high-confidence)	New_genus	New_species	Query is a new genus and species. You could try running again with if you larger distance	temperate	integrase orf_3;antirepressor orf_29
MW247145	Helicobacter phage COL 6-PUJ	26487	37.698	Helicobacter	Group I	Schmidvirus	Schmidvirus	Unclassified	Unclassified	Unclassified	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Helicobacter pylori	High-quality	High-quality	92.650	AAI-based (high-confidence)	Schmidvirus	Schmidvirus new_name	Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level	temperate	integrase orf_2;antirepressor orf_29
MW247144	Helicobacter phage COL 5-PUJ	26486	37.699	Helicobacter	Group I	Schmidvirus	Schmidvirus	Unclassified	Unclassified	Unclassified	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Helicobacter pylori	High-quality	High-quality	92.650	AAI-based (high-confidence)	Schmidvirus	Schmidvirus new_name	Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level	temperate	integrase orf_2;antirepressor orf_29
MW239157	Klebsiella phage vB_KpnM_17-11	165894	39.530	Klebsiella	Group I	Jiaodavirus	Jiaodavirus	Tevenvirinae	Straboviridae	Pantevenvirales	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Klebsiella pneumoniae	High-quality	High-quality	98.230	AAI-based (high-confidence)	Jiaodavirus	Jiaodavirus new_name	Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level	lytic
MW239124	Citrobacter phage CkP1	168463	36.889	Citrobacter	Group I	Koserivirus	Koserivirus	Tevenvirinae	Straboviridae	Pantevenvirales	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Citrobacter koseri	High-quality	High-quality	99.450	AAI-based (high-confidence)	Koserivirus	Koserivirus CkP1	Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level	lytic
MW238767	Staphylococcus phage IME1364_02	42338	35.224	Staphylococcus	Group I	Phietavirus	Phietavirus	Azeredovirinae	Unclassified	Unclassified	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Staphylococcus aureus IME1364	High-quality	High-quality	98.910	AAI-based (high-confidence)	Phietavirus	Phietavirus new_name	The number of expected genera is different from the predicted number of genus clusters. It will require more manual curation	temperate	integrase orf_20;cro orf_22;cro orf_23;antirepressor orf_25;integrase orf_49
MW233709	Escherichia phage UPEC01	169801	40.429	Escherichia	Group I	Gaprivervirus	Gaprivervirus	Tevenvirinae	Straboviridae	Pantevenvirales	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Escherichia coli S3Lug	High-quality	High-quality	99.990	AAI-based (high-confidence)	Gaprivervirus	Gaprivervirus new_name	Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level	lytic
MW221967	Staphylococcus phage PMBT9	41623	36.192	Staphylococcus	Group I	Rockefellervirus	Rockefellervirus	Unclassified	Unclassified	Unclassified	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Unspecified	High-quality	High-quality	100.000	AAI-based (high-confidence)	New_genus	New_species	Query is a new genus and species. You could try running again with if you larger distance	temperate	integrase orf_31;antirepressor orf_35
MW218148	Staphylococcus phage vB_StaM_SA1	260727	26.833	Staphylococcus	Group I	Lentusvirus	Lentusvirus	Wallmarkvirinae	Unclassified	Unclassified	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Staphylococcus lentus	High-quality	High-quality	98.000	AAI-based (high-confidence)	Lentusvirus	Lentusvirus SA1	Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level	temperate	antirepressor orf_86