INPHARED2
INPHARED2 is the new home of the INPHARED resource, providing a curated, regularly updated set of complete bacteriophage genomes with associated metadata and genome quality information, including CheckV assessments and taxonomy generated using taxMyPhage.
Building on the original database, INPHARED2 provides an expanded and improved reference resource for phage genomics; the updated resource and analysis are described in our INPHARED2 preprint. It provides an easy-to-use online search function alongside bulk data downloads. The online database was last updated on 03 October 2026
Explore INPHARED2 data visually
Create interactive summaries of genome metadata and download the resulting figures.
Search INPHARED
Search by accession, description, host or taxonomy. The filters below reflect the initial INPHARED2 display specification.
37654 matching reference genomes out of 37654. Search and filters are active; download will follow after the fields are finalised.
INPHARED2 search results
The results table contains the selected original taxonomy, CheckV, TaxMyPhage and PhageLeads fields. It can be scrolled horizontally for the full record.
| Accession ▼ | Description | Genome Length (bp) | molGC (%) | Host | Baltimore Group | Lowest Taxa | Genus | Sub-family | Family | Order | Class | Phylum | Kingdom | Realm | Isolation Host | CheckV quality | CheckV MIUVIG quality | CheckV completeness | CheckV completeness method | TaxMyPhage genus | TaxMyPhage species | TaxMyPhage message | PhageLeads lifestyle | PhageLeads problematic genes |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| MW926912 | Acinetobacter phage vB_AbaP_100 | 41743 | 39.571 | Acinetobacter | Group I | Friunavirus | Friunavirus | Beijerinckvirinae | Autoscriptoviridae | Autographivirales | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Acinetobacter baumannii | High-quality | High-quality | 100.000 | AAI-based (high-confidence) | Friunavirus | Friunavirus WCHABP5 | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | lytic | |
| MW924889 | Staphylococcus phage vB_StaphS-IVBph354 | 41970 | 32.964 | Staphylococcus | Group I | Biseptimavirus | Biseptimavirus | Bronfenbrennervirinae | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Staphylococcus aureus | High-quality | High-quality | 98.970 | AAI-based (high-confidence) | Biseptimavirus | Biseptimavirus P282 | The number of expected genera is different from the predicted number of genus clusters. It will require more manual curation | temperate | integrase orf_25;cro orf_31;cro orf_32 |
| MW924650 | Gordonia phage Neobush | 50906 | 66.670 | Gordonia | Group I | Nymphadoravirus | Nymphadoravirus | Nymbaxtervirinae | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Gordonia terrae 3612 | High-quality | High-quality | 97.020 | AAI-based (high-confidence) | Nymphadoravirus | Nymphadoravirus kita | The number of expected genera is different from the predicted number of genus clusters. It will require more manual curation | temperate | integrase orf_38;immunity orf_43;antirepressor orf_47 |
| MW924649 | Mycobacterium phage Akhila | 56251 | 62.056 | Mycobacterium | Group I | Cheoctovirus | Cheoctovirus | Gracegardnervirinae | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Mycobacterium smegmatis str. MC2 155 | High-quality | High-quality | 97.580 | AAI-based (high-confidence) | Cheoctovirus | Cheoctovirus new_name | The number of expected genera is different from the predicted number of genus clusters. It will require more manual curation | temperate | immunity orf_32;integrase orf_37;cro orf_40 |
| MW924648 | Gordonia phage Trumpet | 50338 | 66.661 | Gordonia | Group I | Nymphadoravirus | Nymphadoravirus | Nymbaxtervirinae | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Gordonia terrae 3612 | High-quality | High-quality | 95.940 | AAI-based (high-confidence) | Nymphadoravirus | Nymphadoravirus kita | The number of expected genera is different from the predicted number of genus clusters. It will require more manual curation | temperate | integrase orf_39;immunity orf_44;antirepressor orf_48 |
| MW924647 | Microbacterium phage Stoor | 41814 | 69.111 | Microbacterium | Group I | Dismasvirus | Dismasvirus | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Microbacterium foliorum NRRL B-24224 | High-quality | High-quality | 100.000 | AAI-based (high-confidence) | Dismasvirus | Dismasvirus new_name | The number of expected genera is different from the predicted number of genus clusters. It will require more manual curation | lytic | |
| MW924646 | Mycobacterium phage Lakes | 49127 | 63.543 | Mycobacterium | Group I | Fromanvirus | Fromanvirus | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Mycobacterium smegmatis str. MC2 155 | High-quality | High-quality | 93.500 | AAI-based (high-confidence) | Fromanvirus | Fromanvirus D29 | The number of expected genera is different from the predicted number of genus clusters. It will require more manual curation | temperate | integrase orf_31 |
| MW924645 | Gordonia phage Sanjuju | 59075 | 67.731 | Gordonia | Group I | Vividuovirus | Vividuovirus | Schenleyvirinae | Stackebrandtviridae | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Gordonia terrae 3612 | High-quality | High-quality | 100.000 | AAI-based (high-confidence) | Vividuovirus | Vividuovirus new_name | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | lytic | |
| MW924644 | Mycobacterium phage GlenHope | 68705 | 67.503 | Mycobacterium | Group I | Pipefishvirus | Pipefishvirus | Bclasvirinae | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Mycobacterium smegmatis str. MC2 155 | High-quality | High-quality | 98.430 | AAI-based (high-confidence) | Pipefishvirus | Pipefishvirus athena | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | lytic | |
| MW924643 | Mycobacterium phage Smeagan | 53311 | 63.328 | Mycobacterium | Group I | Turbidovirus | Turbidovirus | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Mycobacterium smegmatis str. MC2 155 | High-quality | High-quality | 100.000 | AAI-based (high-confidence) | Turbidovirus | Turbidovirus turbido | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | temperate | integrase orf_34;immunity orf_74 |