INPHARED2

INPHARED2 is the new home of the INPHARED resource, providing a curated, regularly updated set of complete bacteriophage genomes with associated metadata and genome quality information, including CheckV assessments and taxonomy generated using taxMyPhage.

Building on the original database, INPHARED2 provides an expanded and improved reference resource for phage genomics; the updated resource and analysis are described in our INPHARED2 preprint. It provides an easy-to-use online search function alongside bulk data downloads. The online database was last updated on 03 October 2026

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Search by accession, description, host or taxonomy. The filters below reflect the initial INPHARED2 display specification.

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37654 matching reference genomes out of 37654. Search and filters are active; download will follow after the fields are finalised.

INPHARED2 search results

The results table contains the selected original taxonomy, CheckV, TaxMyPhage and PhageLeads fields. It can be scrolled horizontally for the full record.

Accession ▼	Description	Genome Length (bp)	molGC (%)	Host	Baltimore Group	Lowest Taxa	Genus	Sub-family	Family	Order	Class	Phylum	Kingdom	Realm	Isolation Host	CheckV quality	CheckV MIUVIG quality	CheckV completeness	CheckV completeness method	TaxMyPhage genus	TaxMyPhage species	TaxMyPhage message	PhageLeads lifestyle	PhageLeads problematic genes
MZ005674	Mycobacterium phage Dole	60621	66.348	Mycobacterium	Group I	Anayavirus	Anayavirus	Weiservirinae	Unclassified	Unclassified	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Mycobacterium smegmatis str. MC2 155	High-quality	High-quality	99.060	AAI-based (high-confidence)	Anayavirus	Anayavirus new_name	The number of expected genera is different from the predicted number of genus clusters. It will require more manual curation	temperate	integrase orf_43;immunity orf_45
MZ005672	Mycobacterium phage Hail	53746	67.451	Mycobacterium	Group I	Gilesvirus	Gilesvirus	Unclassified	Unclassified	Unclassified	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Mycobacterium smegmatis str. MC2 155	High-quality	High-quality	97.970	AAI-based (high-confidence)	Gilesvirus	Gilesvirus giles	Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level	temperate	integrase orf_29
MZ005671	Gordonia phage DumpTruck	67754	57.949	Gordonia	Group I	Lambovirus	Lambovirus	Dovevirinae	Unclassified	Unclassified	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Gordonia rubripertincta NRRL B-16540	High-quality	High-quality	99.900	AAI-based (high-confidence)	Xeniaduovirus	Xeniaduovirus xenia2	Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level	lytic
MZ005670	Microbacterium phage Mandalorian	40407	63.756	Microbacterium	Group I	Elerivirus	Elerivirus	Unclassified	Unclassified	Unclassified	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Microbacterium foliorum NRRL B-24224	High-quality	High-quality	99.120	AAI-based (high-confidence)	New_genus	New_species	Query is a new genus and species. You could try running again with if you larger distance	lytic
MZ004649	Salmonella phage vB_STM-ZS	40542	51.130	Salmonella	Group I	Cornellvirus	Cornellvirus	Guernseyvirinae	Sarkviridae	Unclassified	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Salmonella enterica subsp. enterica serovar Typhimurium ATCC 14028	High-quality	High-quality	95.320	AAI-based (high-confidence)	Cornellvirus	Cornellvirus ZS	Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level	lytic
MW980074	Rhizobium phage RHEph27	46040	56.249	Rhizobium	Group I	Unclassified	Unclassified	Unclassified	Unclassified	Autographivirales	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Rhizobium etli sv. phaseoli CFN42	High-quality	High-quality	100.000	AAI-based (high-confidence)	Tepoztlanvirus	Tepoztlanvirus RHphTM34	Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level	lytic
MW980073	Rhizobium phage RHEph26	53859	56.421	Rhizobium	Group I	Kleczkowskavirus	Kleczkowskavirus	Unclassified	Unclassified	Unclassified	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Rhizobium phaseoli sv. phaseoli GR56	High-quality	High-quality	99.470	AAI-based (high-confidence)	Kleczkowskavirus	Kleczkowskavirus RHEph4	Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level	lytic
MW980072	Rhizobium phage RHEph24	77615	45.999	Rhizobium	Group I	Schitoviridae	Unclassified	Unclassified	Schitoviridae	Unclassified	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Rhizobium phaseoli sv. phaseoli R650	High-quality	High-quality	99.870	AAI-based (high-confidence)	Acanvirus	Acanvirus Rheph22	Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level	lytic
MW980071	Rhizobium phage RHEph22	77655	45.912	Rhizobium	Group I	Acanvirus	Acanvirus	Demetervirinae	Schitoviridae	Unclassified	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Rhizobium phaseoli sv. phaseoli R744	High-quality	High-quality	99.920	AAI-based (high-confidence)	Acanvirus	Acanvirus Rheph22	Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level	lytic
MW980070	Rhizobium phage RHEph21	40454	58.602	Rhizobium	Group I	Chamilpavirus	Chamilpavirus	Unclassified	Unclassified	Autographivirales	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Rhizobium gallicum sv. phaseoli R72	High-quality	High-quality	96.290	AAI-based (high-confidence)	Chamilpavirus	Chamilpavirus RHEph21	Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level	temperate	integrase orf_3