INPHARED2
INPHARED2 is the new home of the INPHARED resource, providing a curated, regularly updated set of complete bacteriophage genomes with associated metadata and genome quality information, including CheckV assessments and taxonomy generated using taxMyPhage.
Building on the original database, INPHARED2 provides an expanded and improved reference resource for phage genomics; the updated resource and analysis are described in our INPHARED2 preprint. It provides an easy-to-use online search function alongside bulk data downloads. The online database was last updated on 03 October 2026
Explore INPHARED2 data visually
Create interactive summaries of genome metadata and download the resulting figures.
Search INPHARED
Search by accession, description, host or taxonomy. The filters below reflect the initial INPHARED2 display specification.
37654 matching reference genomes out of 37654. Search and filters are active; download will follow after the fields are finalised.
INPHARED2 search results
The results table contains the selected original taxonomy, CheckV, TaxMyPhage and PhageLeads fields. It can be scrolled horizontally for the full record.
| Accession ▼ | Description | Genome Length (bp) | molGC (%) | Host | Baltimore Group | Lowest Taxa | Genus | Sub-family | Family | Order | Class | Phylum | Kingdom | Realm | Isolation Host | CheckV quality | CheckV MIUVIG quality | CheckV completeness | CheckV completeness method | TaxMyPhage genus | TaxMyPhage species | TaxMyPhage message | PhageLeads lifestyle | PhageLeads problematic genes |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| MZ127829 | Sphingopyxis phage VSN-002 | 41771 | 61.710 | Sphingopyxis | Group I | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Sphingopyxis sp. | High-quality | High-quality | 100.000 | AAI-based (high-confidence) | New_genus | New_species | No hits were found with the default settings | temperate | integrase orf_37 |
| MZ127825 | Salmonella phage S1 | 53394 | 45.820 | Salmonella | Group I | Loughboroughvirus | Loughboroughvirus | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Salmonella enterica subsp enterica serovar Enteritidis SE PT13A | High-quality | High-quality | 100.000 | AAI-based (high-confidence) | Loughboroughvirus | Loughboroughvirus ZCSE2 | The number of expected genera is different from the predicted number of genus clusters. It will require more manual curation | lytic | |
| MZ099557 | Acinetobacter phage vB_AbaP_WU2001 | 40792 | 39.410 | Acinetobacter | Group I | Friunavirus | Friunavirus | Beijerinckvirinae | Autoscriptoviridae | Autographivirales | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Acinetobacter baumannii | Complete | High-quality | 100.000 | DTR (high-confidence) | Friunavirus | Friunavirus WU2001 | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | lytic | |
| MZ092003 | Paenibacillus phage Pd_22F | 86388 | 50.759 | Paenibacillus | Group I | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Paenibacillus dendritiformis PB22F | High-quality | High-quality | 100.000 | AAI-based (medium-confidence) | New_genus | New_species | No hits were found with the default settings | lytic | |
| MZ090946 | Streptococcus phage 123 | 36129 | 38.670 | Streptococcus | Group I | Moineauvirus | Moineauvirus | Unclassified | Aliceevansviridae | Unclassified | Caudoviricetes | Uroviricota | Heunggongvirae | Duplodnaviria | Streptococcus thermophilus UY04 | High-quality | High-quality | 97.480 | AAI-based (high-confidence) | Moineauvirus | Moineauvirus new_name | Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level | temperate | antirepressor orf_27;cro orf_28 |
| MZ089979 | Bacillus phage Sole | 14444 | 39.580 | Bacillus | Group I | Betatectivirus | Betatectivirus | Unclassified | Tectiviridae | Kalamavirales | Tectiliviricetes | Preplasmiviricota | Bamfordvirae | Varidnaviria | Bacillus cereus VD166 | High-quality | High-quality | 98.050 | AAI-based (high-confidence) | Betatectivirus | Betatectivirus sole | The number of expected genera is different from the predicted number of genus clusters. It will require more manual curation | lytic | |
| MZ089978 | Bacillus phage Sato | 14852 | 39.160 | Bacillus | Group I | Betatectivirus | Betatectivirus | Unclassified | Tectiviridae | Kalamavirales | Tectiliviricetes | Preplasmiviricota | Bamfordvirae | Varidnaviria | Bacillus cereus AND1284 | High-quality | High-quality | 100.000 | AAI-based (high-confidence) | Betatectivirus | Betatectivirus sato | The number of expected genera is different from the predicted number of genus clusters. It will require more manual curation | lytic | |
| MZ089811 | Microvirus mar65 | 7225 | 38.422 | Unspecified | Group II | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Microviricetes | Phixviricota | Sangervirae | Floreoviria | Marmota flaviventris | High-quality | High-quality | 98.300 | HMM-based (lower-bound) | New_genus | New_species | No hits were found with the default settings | unknown | |
| MZ089810 | Microvirus mar64 | 6994 | 48.256 | Unspecified | Group II | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Microviricetes | Phixviricota | Sangervirae | Floreoviria | Marmota flaviventris | High-quality | High-quality | 94.110 | HMM-based (lower-bound) | New_genus | New_species | No hits were found with the default settings | unknown | |
| MZ089809 | Microvirus mar63 | 6688 | 48.146 | Unspecified | Group II | Unclassified | Unclassified | Unclassified | Unclassified | Unclassified | Microviricetes | Phixviricota | Sangervirae | Floreoviria | Marmota flaviventris | High-quality | High-quality | 100.000 | AAI-based (high-confidence) | New_genus | New_species | No hits were found with the default settings | unknown |