INPHARED2

INPHARED2 is the new home of the INPHARED resource, providing a curated, regularly updated set of complete bacteriophage genomes with associated metadata and genome quality information, including CheckV assessments and taxonomy generated using taxMyPhage.

Building on the original database, INPHARED2 provides an expanded and improved reference resource for phage genomics; the updated resource and analysis are described in our INPHARED2 preprint. It provides an easy-to-use online search function alongside bulk data downloads. The online database was last updated on 03 October 2026

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Search by accession, description, host or taxonomy. The filters below reflect the initial INPHARED2 display specification.

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37654 matching reference genomes out of 37654. Search and filters are active; download will follow after the fields are finalised.

INPHARED2 search results

The results table contains the selected original taxonomy, CheckV, TaxMyPhage and PhageLeads fields. It can be scrolled horizontally for the full record.

Accession ▼	Description	Genome Length (bp)	molGC (%)	Host	Baltimore Group	Lowest Taxa	Genus	Sub-family	Family	Order	Class	Phylum	Kingdom	Realm	Isolation Host	CheckV quality	CheckV MIUVIG quality	CheckV completeness	CheckV completeness method	TaxMyPhage genus	TaxMyPhage species	TaxMyPhage message	PhageLeads lifestyle	PhageLeads problematic genes
MZ274310	Mycobacterium phage Boilgate	57889	65.354	Mycobacterium	Group I	Weiservirinae	Unclassified	Weiservirinae	Unclassified	Unclassified	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Mycobacterium smegmatis str. MC2 155	High-quality	High-quality	100.000	AAI-based (high-confidence)	New_genus	New_species	No hits were found with the default settings	temperate	integrase orf_37
MZ274309	Arthrobacter phage CastorTray	58377	50.006	Arthrobacter	Group I	Gordonvirus	Gordonvirus	Unclassified	Unclassified	Unclassified	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Arthrobacter sp. ATCC 21022	High-quality	High-quality	100.000	AAI-based (high-confidence)	Gordonvirus	Gordonvirus castortray	Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level	lytic
MZ274308	Arthrobacter phage Popper	41822	65.238	Arthrobacter	Group I	Nanditavirus	Nanditavirus	Daemsvirinae	Unclassified	Unclassified	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Arthrobacter globiformis B-2979	High-quality	High-quality	98.490	AAI-based (high-confidence)	Nanditavirus	Nanditavirus popper	Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level	temperate	integrase orf_34
MZ274307	Microbacterium phage Leafy	17407	68.668	Microbacterium	Group I	Paopuvirus	Paopuvirus	Pelczarvirinae	Orlajensenviridae	Unclassified	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Microbacterium foliorum NRRL B-24224	High-quality	High-quality	100.000	AAI-based (high-confidence)	Paopuvirus	Paopuvirus bri160	Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level	lytic
MZ274304	Gordonia phage Agueybana	52807	66.775	Gordonia	Group I	Nymphadoravirus	Nymphadoravirus	Nymbaxtervirinae	Unclassified	Unclassified	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Gordonia terrae 3612	High-quality	High-quality	100.000	AAI-based (high-confidence)	Nymphadoravirus	Nymphadoravirus agueybana	The number of expected genera is different from the predicted number of genus clusters. It will require more manual curation	temperate	integrase orf_37;cro orf_47;antirepressor orf_50
MZ274225	Salmonella phage fmb-p1	40731	49.832	Salmonella	Group I	Jerseyvirus	Jerseyvirus	Guernseyvirinae	Sarkviridae	Unclassified	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Salmonella enterica subsp. enterica serovar Typhimurium CMCC 50115	High-quality	High-quality	95.060	AAI-based (high-confidence)	Jerseyvirus	Jerseyvirus fmbp1	Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level	lytic
MZ272341	Enterococcus phage vB_EfaS_785CC	40956	34.781	Enterococcus	Group I	Efquatrovirus	Efquatrovirus	Unclassified	Unclassified	Unclassified	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Enterococcus faecalis	High-quality	High-quality	100.000	AAI-based (high-confidence)	Efquatrovirus	Efquatrovirus new_name	Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level	lytic
MZ234053	Escherichia phage vB_EcoM-PM136	169519	35.334	Escherichia	Group I	Tequatrovirus	Tequatrovirus	Tevenvirinae	Straboviridae	Pantevenvirales	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Escherichia coli	High-quality	High-quality	100.000	AAI-based (high-confidence)	Tequatrovirus	Tequatrovirus ecombl75	Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level	lytic
MZ234052	Escherichia phage vB_EcoM-PM133	169292	35.357	Escherichia	Group I	Tequatrovirus	Tequatrovirus	Tevenvirinae	Straboviridae	Pantevenvirales	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Escherichia coli	High-quality	High-quality	100.000	AAI-based (high-confidence)	Tequatrovirus	Tequatrovirus ecombl75	Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level	lytic
MZ234051	Escherichia phage vB_EcoM-PM108	169415	35.368	Escherichia	Group I	Tequatrovirus	Tequatrovirus	Tevenvirinae	Straboviridae	Pantevenvirales	Caudoviricetes	Uroviricota	Heunggongvirae	Duplodnaviria	Escherichia coli	High-quality	High-quality	100.000	AAI-based (high-confidence)	Tequatrovirus	Tequatrovirus ecombl75	Current ICTV taxonomy and the clustering on genomic similarity algorithm output appear to be consistent at the genus level	lytic